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Aliases for SDHDP6 Gene

Aliases for SDHDP6 Gene

  • Succinate Dehydrogenase Complex Subunit D Pseudogene 6 2 3 5
  • Succinate Dehydrogenase Complex, Subunit D, Integral Membrane Protein Pseudogene 6 2
  • Succinate Dehydrogenase Complex Subunit D, Integral Membrane Protein Pseudogene 6 2

External Ids for SDHDP6 Gene

Previous GeneCards Identifiers for SDHDP6 Gene

  • GC01U990302
  • GC01M025365
  • GC01M025492
  • GC01M025619
  • GC01M023874

Summaries for SDHDP6 Gene

GeneCards Summary for SDHDP6 Gene

SDHDP6 (Succinate Dehydrogenase Complex Subunit D Pseudogene 6) is a Pseudogene.

Additional gene information for SDHDP6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHDP6 Gene

Genomics for SDHDP6 Gene

GeneHancer (GH) Regulatory Elements for SDHDP6 Gene

Promoters and enhancers for SDHDP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I025030 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.6 +261.1 261111 6.2 HDGF PKNOX1 SMAD1 FEZF1 YBX1 GLI4 IRF4 ZNF207 ATF7 RUNX3 SRRM1 MAN1C1 RUNX3 SYF2 LOC105376878 ENSG00000261349 STMN1 RSRP1 SDHDP6 LOC105376879
GH01I025236 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.6 +57.3 57317 2.2 HDGF HDAC1 KLF17 ZBTB40 ZEB1 ZNF335 ZNF766 ARID2 EGR1 KLF7 SDHDP6 EXTL1 ENSG00000284602 ENSG00000284657
GH01I025265 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 4.8 +27.5 27468 2.8 HDAC1 CTCF MEIS2 MXI1 PKNOX1 ZBTB40 ZKSCAN1 E2F1 GATA3 POLR2A ENSG00000261349 PIR62341 RHCE SDHDP6 RHD RSRP1
GH01I025283 Enhancer 0.9 dbSUPER 7.3 +9.7 9736 3 HDAC1 NFIB ARNT NFXL1 CHAMP1 NCOA2 TCF12 ATF7 CEBPB NCOA1 GC01P025285 RHD RHCE SDHDP6 PAQR7 LOC105376882 RSRP1
GH01I025278 Enhancer 0.5 dbSUPER 12.8 +18.8 18799 1.6 BCOR FOSL1 MEIS2 PKNOX1 SMARCA4 DPF2 LOC105376882 RHD SDHDP6 GC01P025285 RSRP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SDHDP6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SDHDP6 Gene

Genomic Locations for SDHDP6 Gene
chr1:25,293,358-25,294,669
(GRCh38/hg38)
Size:
1,312 bases
Orientation:
Minus strand
chr1:25,619,849-25,621,160
(GRCh37/hg19)

Genomic View for SDHDP6 Gene

Genes around SDHDP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHDP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHDP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHDP6 Gene

Proteins for SDHDP6 Gene

Post-translational modifications for SDHDP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHDP6 Gene

Domains & Families for SDHDP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHDP6 Gene

Function for SDHDP6 Gene

Molecular function for SDHDP6 Gene

GENATLAS Biochemistry:
succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 6

Phenotypes From GWAS Catalog for SDHDP6 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHDP6 Gene

Localization for SDHDP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDHDP6 Gene

Pathways & Interactions for SDHDP6 Gene

SuperPathways for SDHDP6 Gene

No Data Available

Interacting Proteins for SDHDP6 Gene

Gene Ontology (GO) - Biological Process for SDHDP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDHDP6 Gene

Drugs & Compounds for SDHDP6 Gene

No Compound Related Data Available

Transcripts for SDHDP6 Gene

mRNA/cDNA for SDHDP6 Gene

(16) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDHDP6 Gene

No ASD Table

Relevant External Links for SDHDP6 Gene

GeneLoc Exon Structure for
SDHDP6
ECgene alternative splicing isoforms for
SDHDP6

Expression for SDHDP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDHDP6 Gene

mRNA differential expression in normal tissues according to GTEx for SDHDP6 Gene

This gene is overexpressed in Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of SDHDP6 Gene:

SDHDP6
genes like me logo Genes that share expression patterns with SDHDP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDHDP6 Gene

Orthologs for SDHDP6 Gene

Evolution for SDHDP6 Gene

ENSEMBL:
Gene Tree for SDHDP6 (if available)
TreeFam:
Gene Tree for SDHDP6 (if available)

No data available for Orthologs for SDHDP6 Gene

Paralogs for SDHDP6 Gene

No data available for Paralogs for SDHDP6 Gene

Variants for SDHDP6 Gene

Additional Variant Information for SDHDP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDHDP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SDHDP6 Gene

Disorders for SDHDP6 Gene

No disorders were found for SDHDP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SDHDP6 Gene

Publications for SDHDP6 Gene

  1. Characterization of the human SDHD gene encoding the small subunit of cytochrome b (cybS) in mitochondrial succinate-ubiquinone oxidoreductase. (PMID: 10482792) Hirawake H … Kita K (Biochimica et biophysica acta 1999) 2 3 58
  2. RHCE represents the ancestral RH position, while RHD is the duplicated gene. (PMID: 11902138) Wagner FF … Flegel WA (Blood 2002) 3 58

Products for SDHDP6 Gene

Sources for SDHDP6 Gene

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