Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SDHAP3 Gene

Aliases for SDHAP3 Gene

  • Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 3 2 3 5
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 3 2 3
  • SDHA C-Terminal Like 2 3
  • Succinate Dehydrogenase Complex Subunit A, Flavoprotein Pseudogene 3 2
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 2
  • Similar To Succinate Dehydrogenase Flavoprotein Subunit 2
  • SDHACL 3
  • SDHAL 3

External Ids for SDHAP3 Gene

Previous HGNC Symbols for SDHAP3 Gene

  • SDHAL
  • SDHACL

Previous GeneCards Identifiers for SDHAP3 Gene

  • GC05M001628
  • GC05U901046
  • GC05M001572
  • GC05M001553
  • GC05M001570

Summaries for SDHAP3 Gene

GeneCards Summary for SDHAP3 Gene

SDHAP3 (Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 3) is a Pseudogene.

Additional gene information for SDHAP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP3 Gene

Genomics for SDHAP3 Gene

GeneHancer (GH) Regulatory Elements for SDHAP3 Gene

Promoters and enhancers for SDHAP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I001593 Promoter/Enhancer 1.5 Ensembl ENCODE 588.2 +0.1 111 1.4 HDGF ARID4B SIN3A DMAP1 ZNF2 ZNF48 GTF3C2 ZNF121 GLIS2 ARID2 SDHAP3 ENSG00000271119 LOC728613 SLC6A3 ENSG00000251532 GC05P001587 GC05M001591
GH05I001632 Promoter/Enhancer 1.6 Ensembl ENCODE 46.4 -39.0 -38981 2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B ZNF213 E2F8 LOC728613 SDHAP3 ENSG00000251532 LOC100132773 PIR35930 GC05M001591
GH05I001798 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 34 -206.1 -206122 4.1 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 MRPL36 GC05P001799 NDUFS6 SDHAP3 BRD9 LOC100132773 LOC728613 ENSG00000271119
GH05I001948 Enhancer 1.1 ENCODE dbSUPER 52.2 -354.9 -354852 2.7 ZNF493 ZNF133 ZNF2 GLIS2 ZNF416 ZNF548 FOS KLF13 SP3 YY2 SDHAP3 ENSG00000271119 LOC728613 LOC100132773 MRPL36 NDUFS6 ENSG00000249731 ENSG00000248994 ENSG00000248597 IRX4
GH05I000611 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 26.1 +981.3 981302 3.6 PKNOX1 ARNT ARID4B SIN3A ZBTB7B YY1 CBX5 ZNF143 SP3 SMARCB1 CEP72 LOC100996325 SDHAP3 ENSG00000271781 BRD9P2 PDCD6 SLC9A3-AS1 BRD9 EXOC3 GC05P000616
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SDHAP3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SDHAP3 gene promoter:

Genomic Locations for SDHAP3 Gene

Genomic Locations for SDHAP3 Gene
chr5:1,571,957-1,594,620
(GRCh38/hg38)
Size:
22,664 bases
Orientation:
Minus strand
chr5:1,568,637-1,594,735
(GRCh37/hg19)

Genomic View for SDHAP3 Gene

Genes around SDHAP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHAP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHAP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAP3 Gene

Proteins for SDHAP3 Gene

Post-translational modifications for SDHAP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP3 Gene

Domains & Families for SDHAP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHAP3 Gene

Function for SDHAP3 Gene

Phenotypes From GWAS Catalog for SDHAP3 Gene

Phenotypes for SDHAP3 Gene

GenomeRNAi human phenotypes for SDHAP3:
genes like me logo Genes that share phenotypes with SDHAP3: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHAP3 Gene

Localization for SDHAP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDHAP3 Gene

Pathways & Interactions for SDHAP3 Gene

SuperPathways for SDHAP3 Gene

No Data Available

Interacting Proteins for SDHAP3 Gene

Gene Ontology (GO) - Biological Process for SDHAP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDHAP3 Gene

Drugs & Compounds for SDHAP3 Gene

No Compound Related Data Available

Transcripts for SDHAP3 Gene

mRNA/cDNA for SDHAP3 Gene

(8) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDHAP3 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP3 Gene

No ASD Table

Relevant External Links for SDHAP3 Gene

GeneLoc Exon Structure for
SDHAP3
ECgene alternative splicing isoforms for
SDHAP3

Expression for SDHAP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDHAP3 Gene

Protein differential expression in normal tissues from HIPED for SDHAP3 Gene

This gene is overexpressed in Brain (48.7) and Heart (20.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SDHAP3 Gene



Protein tissue co-expression partners for SDHAP3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SDHAP3 Gene:

SDHAP3

SOURCE GeneReport for Unigene cluster for SDHAP3 Gene:

Hs.379186
genes like me logo Genes that share expression patterns with SDHAP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDHAP3 Gene

Orthologs for SDHAP3 Gene

Evolution for SDHAP3 Gene

ENSEMBL:
Gene Tree for SDHAP3 (if available)
TreeFam:
Gene Tree for SDHAP3 (if available)

No data available for Orthologs for SDHAP3 Gene

Paralogs for SDHAP3 Gene

No data available for Paralogs for SDHAP3 Gene

Variants for SDHAP3 Gene

Sequence variations from dbSNP and Humsavar for SDHAP3 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000263974 -- 1,588,756(-) C/T intron_variant
rs1000685098 -- 1,589,006(-) G/T intron_variant
rs1000721597 -- 1,594,807(-) G/A upstream_transcript_variant
rs1000745325 -- 1,577,957(-) AG/ intron_variant
rs1000753850 -- 1,594,671(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP3 Gene

Variant ID Type Subtype PubMed ID
dgv3199e59 CNV duplication 20981092
esv1266763 CNV insertion 17803354
esv3565364 CNV deletion 23714750
esv3603814 CNV loss 21293372
nsv10657 CNV loss 18304495
nsv1133013 OTHER inversion 24896259
nsv1147234 OTHER inversion 26484159
nsv1151023 CNV insertion 26484159
nsv509046 CNV insertion 20534489
nsv596879 CNV gain 21841781
nsv596885 CNV loss 21841781
nsv980605 CNV duplication 23825009

Additional Variant Information for SDHAP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDHAP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDHAP3 Gene

Disorders for SDHAP3 Gene

Additional Disease Information for SDHAP3

No disorders were found for SDHAP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDHAP3 Gene

Publications for SDHAP3 Gene

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin BM … Amundadottir LT (Nature genetics 2014) 3 58
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SDHAP3 Gene

Sources for SDHAP3 Gene

Content
Loading form....