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Aliases for SDHAP2 Gene

Aliases for SDHAP2 Gene

  • Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 2 2 3 5
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 2 2 3
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 2 2 3
  • Succinate Dehydrogenase Complex Subunit A, Flavoprotein Pseudogene 2 2
  • SDHALP2 3
  • SDHAL2 3

External Ids for SDHAP2 Gene

Previous HGNC Symbols for SDHAP2 Gene

  • SDHAL2

Previous GeneCards Identifiers for SDHAP2 Gene

  • GC03U901266
  • GC03P195385
  • GC03M193002
  • GC03P195386

Summaries for SDHAP2 Gene

GeneCards Summary for SDHAP2 Gene

SDHAP2 (Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 2) is a Pseudogene.

Additional gene information for SDHAP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP2 Gene

Genomics for SDHAP2 Gene

GeneHancer (GH) Regulatory Elements for SDHAP2 Gene

Promoters and enhancers for SDHAP2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I195657 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 +0.2 162 2 ATF1 ARNT SIN3A GTF3C2 ZNF121 POLR2B ZNF207 ZNF143 ATF7 SP3 LINC00969 ENSG00000229178 GC03P195660 SDHAP2 MUC20 MUC20P1
GH03I196316 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 52.8 +660.0 660042 2.8 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B E2F8 ZNF143 ZNF207 TCTEX1D2 ENSG00000272741 TM4SF19-AS1 SDHAP1 SDHAP2 UBXN7 LINC00969 RNU6ATAC24P RNF168 ENSG00000271662
GH03I196078 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 43 +422.9 422943 4.4 MLX DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 MEF2D GLIS1 RCOR2 TFRC SDHAP1 SDHAP2 LINC00969 UBXN7 ACAP2 ENSG00000230732 RNU6ATAC24P MUC4 SENP5
GH03I196163 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 57.9 +506.6 506600 2.9 HDGF ARNT ZNF493 ARID4B YBX1 DMAP1 ZNF2 TCF12 SLC30A9 POLR2B SDHAP1 SDHAP2 LINC00969 UBXN7 RNU6ATAC24P ACAP2 ENSG00000230732 RNF168 UBXN7-AS1 GC03P196177
GH03I195905 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 35.5 +250.9 250869 7 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A YBX1 FEZF1 ZNF2 ZBTB7B TNK2-AS1 TNK2 SDHAP2 ENSG00000271662 LINC00969 SDHAP1 RNU6ATAC24P UBXN7 MIR570 MUC20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SDHAP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SDHAP2 Gene

Genomic Locations for SDHAP2 Gene
30,833 bases
Plus strand

Genomic View for SDHAP2 Gene

Genes around SDHAP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHAP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHAP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SDHAP2 Gene

Post-translational modifications for SDHAP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP2 Gene

Domains & Families for SDHAP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHAP2 Gene

Function for SDHAP2 Gene

Phenotypes From GWAS Catalog for SDHAP2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHAP2 Gene

Localization for SDHAP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDHAP2 Gene

Pathways & Interactions for SDHAP2 Gene

SuperPathways for SDHAP2 Gene

No Data Available

Interacting Proteins for SDHAP2 Gene

Gene Ontology (GO) - Biological Process for SDHAP2 Gene


No data available for Pathways by source and SIGNOR curated interactions for SDHAP2 Gene

Drugs & Compounds for SDHAP2 Gene

No Compound Related Data Available

Transcripts for SDHAP2 Gene

mRNA/cDNA for SDHAP2 Gene

(11) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDHAP2 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP2 Gene

No ASD Table

Relevant External Links for SDHAP2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SDHAP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDHAP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SDHAP2 Gene:


SOURCE GeneReport for Unigene cluster for SDHAP2 Gene:

genes like me logo Genes that share expression patterns with SDHAP2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDHAP2 Gene

Orthologs for SDHAP2 Gene

Evolution for SDHAP2 Gene

Gene Tree for SDHAP2 (if available)
Gene Tree for SDHAP2 (if available)

No data available for Orthologs for SDHAP2 Gene

Paralogs for SDHAP2 Gene

No data available for Paralogs for SDHAP2 Gene

Variants for SDHAP2 Gene

Sequence variations from dbSNP and Humsavar for SDHAP2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000024863 -- 195,677,913(+) G/T intron_variant
rs1000544492 -- 195,676,536(+) G/A/C intron_variant
rs1001648329 -- 195,656,394(+) G/T upstream_transcript_variant
rs1002484803 -- 195,688,153(+) T/G intron_variant
rs1002600685 -- 195,659,631(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP2 Gene

Variant ID Type Subtype PubMed ID
dgv185n111 CNV duplication 26073780
dgv2683n106 OTHER inversion 24896259
dgv2881e59 CNV duplication 20981092
dgv5014n100 CNV gain 25217958
dgv5015n100 CNV loss 25217958
dgv5016n100 CNV gain+loss 25217958
dgv5017n100 CNV gain+loss 25217958
dgv5018n100 CNV loss 25217958
dgv5019n100 CNV gain+loss 25217958
dgv5020n100 CNV loss 25217958
dgv5021n100 CNV gain+loss 25217958
dgv5022n100 CNV gain 25217958
dgv5023n100 CNV loss 25217958
dgv8837n54 CNV loss 21841781
dgv8838n54 CNV loss 21841781
dgv8839n54 CNV loss 21841781
dgv905e199 CNV deletion 23128226
esv1494509 CNV deletion 17803354
esv2266152 CNV deletion 18987734
esv22821 CNV gain+loss 19812545
esv2726477 CNV deletion 23290073
esv2726481 CNV deletion 23290073
esv2726482 CNV deletion 23290073
esv2759213 CNV gain+loss 17122850
esv2760775 CNV gain+loss 21179565
esv2763776 CNV gain+loss 21179565
esv3361043 CNV duplication 20981092
esv3361872 CNV duplication 20981092
esv3364440 CNV duplication 20981092
esv3389452 CNV duplication 20981092
esv3389893 CNV duplication 20981092
esv3402778 CNV duplication 20981092
esv3405351 CNV duplication 20981092
esv3405402 CNV duplication 20981092
esv3418945 CNV duplication 20981092
nsv1001387 CNV gain 25217958
nsv1006165 CNV gain 25217958
nsv1006229 CNV gain 25217958
nsv1007562 CNV gain 25217958
nsv1068315 OTHER inversion 25765185
nsv1073706 CNV deletion 25765185
nsv1077429 CNV duplication 25765185
nsv1077430 CNV duplication 25765185
nsv1110422 CNV duplication 24896259
nsv1111260 CNV tandem duplication 24896259
nsv1141447 CNV duplication 24896259
nsv1148295 CNV duplication 26484159
nsv1161018 CNV deletion 26073780
nsv428430 CNV gain+loss 18775914
nsv593022 CNV gain 21841781
nsv593026 CNV loss 21841781
nsv820189 CNV gain 19587683
nsv822408 CNV gain 20364138
nsv950300 CNV duplication 24416366
nsv965246 CNV duplication 23825009
nsv965247 CNV duplication 23825009
nsv979912 CNV duplication 23825009

Additional Variant Information for SDHAP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDHAP2 Gene

Disorders for SDHAP2 Gene

Additional Disease Information for SDHAP2

No disorders were found for SDHAP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDHAP2 Gene

Publications for SDHAP2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SDHAP2 Gene

Sources for SDHAP2 Gene

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