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Aliases for SDCBP2-AS1 Gene

Subcategory (RNA class) for SDCBP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SDCBP2-AS1 Gene

  • SDCBP2 Antisense RNA 1 2 3 5
  • SDCBP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SDCBP2-AS1 Gene

Summaries for SDCBP2-AS1 Gene

GeneCards Summary for SDCBP2-AS1 Gene

SDCBP2-AS1 (SDCBP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SDCBP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDCBP2-AS1 Gene

Genomics for SDCBP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SDCBP2-AS1 Gene

Promoters and enhancers for SDCBP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I001321 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.8 1788 11.1 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 SDCBP2 SDCBP2-AS1 FKBP1A ENSG00000229728 SIRPB1 SIRPG ENSG00000280162 ENSG00000274322 FKBP1A-SDCBP2
GH20I001185 Promoter/Enhancer 1.8 Ensembl ENCODE 9.9 -138.5 -138459 3.8 HDGF ARNT ARID4B YBX1 DMAP1 YY1 SLC30A9 POLR2B CBX5 E2F8 TMEM74B LOC105372496 ENSG00000274269 TBC1D20 ACTG1P3 RBCK1 ENSG00000229728 SDCBP2-AS1 PSMF1
GH20I001827 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +504.3 504259 4.7 FOXA2 ARID4B SIN3A DMAP1 ZNF48 YY1 FOS RXRA SP5 NFYC ZNF343 SNRPB SIRPA ACTG1P3 SDCBP2-AS1 PDYN SDCBP2 ENSG00000230839 PIR58932
GH20I000718 Enhancer 0.7 dbSUPER 13.4 -602.2 -602166 8.6 BCOR ZMYM3 YBX1 PLRG1 TCF12 LCORL POLR2A ZNF366 CBFA2T2 EZH2 TBC1D20 RBCK1 SDCBP2-AS1 SCRT2 SRXN1 ACTG1P3 SLC52A3 CSNK2A1 TCF15 ANGPT4
GH20I000504 Enhancer 0.8 ENCODE 9.8 -820.5 -820495 1.1 ELF3 FOXA2 ARID4B RARA SMARCC2 THAP11 MIXL1 CEBPB NFIL3 MIER3 RBCK1 SDCBP2-AS1 CSNK2A1 GC20M000488 PIR56447 GC20M000487
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SDCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SDCBP2-AS1 Gene

Genomic Locations for SDCBP2-AS1 Gene
chr20:1,325,343-1,378,735
(GRCh38/hg38)
Size:
53,393 bases
Orientation:
Plus strand
chr20:1,305,987-1,359,379
(GRCh37/hg19)

Genomic View for SDCBP2-AS1 Gene

Genes around SDCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDCBP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDCBP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDCBP2-AS1 Gene

Proteins for SDCBP2-AS1 Gene

Post-translational modifications for SDCBP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDCBP2-AS1 Gene

Domains & Families for SDCBP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDCBP2-AS1 Gene

Function for SDCBP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDCBP2-AS1 Gene

Localization for SDCBP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDCBP2-AS1 Gene

Pathways & Interactions for SDCBP2-AS1 Gene

SuperPathways for SDCBP2-AS1 Gene

No Data Available

Interacting Proteins for SDCBP2-AS1 Gene

Gene Ontology (GO) - Biological Process for SDCBP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDCBP2-AS1 Gene

Drugs & Compounds for SDCBP2-AS1 Gene

No Compound Related Data Available

Transcripts for SDCBP2-AS1 Gene

mRNA/cDNA for SDCBP2-AS1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDCBP2-AS1 Gene

SDCBP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDCBP2-AS1 Gene

No ASD Table

Relevant External Links for SDCBP2-AS1 Gene

GeneLoc Exon Structure for
SDCBP2-AS1
ECgene alternative splicing isoforms for
SDCBP2-AS1

Expression for SDCBP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDCBP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for SDCBP2-AS1 Gene:

Hs.655785
genes like me logo Genes that share expression patterns with SDCBP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDCBP2-AS1 Gene

Orthologs for SDCBP2-AS1 Gene

Evolution for SDCBP2-AS1 Gene

ENSEMBL:
Gene Tree for SDCBP2-AS1 (if available)
TreeFam:
Gene Tree for SDCBP2-AS1 (if available)

No data available for Orthologs for SDCBP2-AS1 Gene

Paralogs for SDCBP2-AS1 Gene

No data available for Paralogs for SDCBP2-AS1 Gene

Variants for SDCBP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SDCBP2-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000027090 -- 1,364,328(+) C/T intron_variant
rs1000043577 -- 1,364,059(+) A/G intron_variant
rs1000097636 -- 1,329,149(+) C/T intron_variant
rs1000139687 -- 1,373,916(+) A/C intron_variant
rs1000162892 -- 1,366,233(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SDCBP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv979410 CNV duplication 23825009
nsv522008 CNV gain 19592680
nsv1147992 OTHER inversion 26484159
nsv1118074 CNV deletion 24896259
nsv1057097 CNV gain 25217958
esv3644976 CNV loss 21293372
esv2664030 CNV deletion 23128226

Additional Variant Information for SDCBP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDCBP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDCBP2-AS1 Gene

Disorders for SDCBP2-AS1 Gene

Additional Disease Information for SDCBP2-AS1

No disorders were found for SDCBP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDCBP2-AS1 Gene

Publications for SDCBP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SDCBP2-AS1 Gene

Sources for SDCBP2-AS1 Gene

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