Aliases for SDC4P Gene

Aliases for SDC4P Gene

  • Syndecan 4 Pseudogene 2 3 5
  • SDC4P 5

External Ids for SDC4P Gene

Previous GeneCards Identifiers for SDC4P Gene

  • GC22U990241
  • GC22M029202
  • GC22M029203
  • GC22M029204
  • GC22M030877
  • GC22M013839

Summaries for SDC4P Gene

GeneCards Summary for SDC4P Gene

SDC4P (Syndecan 4 Pseudogene) is a Pseudogene.

Additional gene information for SDC4P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SDC4P Gene

Genomics for SDC4P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SDC4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J030483 Enhancer 0.3 Ensembl 600.7 -1.6 -1590 0.2 RFX1 BMI1 LOC107985579 SDC4P lnc-SEC14L4-1 ENSG00000181123 SEC14L3 piR-43105-429 SEC14L4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SDC4P on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SDC4P gene promoter:
  • AML1a
  • C/EBPalpha
  • GATA-1
  • HEN1
  • MyoD
  • NF-1
  • NRSF form 1
  • NRSF form 2

Genomic Locations for SDC4P Gene

Genomic Locations for SDC4P Gene
chr22:30,481,290-30,481,911
(GRCh38/hg38)
Size:
622 bases
Orientation:
Minus strand
chr22:30,877,277-30,877,898
(GRCh37/hg19)
Size:
622 bases
Orientation:
Minus strand

Genomic View for SDC4P Gene

Genes around SDC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDC4P Gene

Proteins for SDC4P Gene

No data available for DME Specific Peptides for SDC4P Gene

Domains & Families for SDC4P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SDC4P Gene

Function for SDC4P Gene

Phenotypes From GWAS Catalog for SDC4P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDC4P Gene

Localization for SDC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDC4P Gene

Pathways & Interactions for SDC4P Gene

PathCards logo

SuperPathways for SDC4P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SDC4P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SDC4P Gene

Drugs & Compounds for SDC4P Gene

No Compound Related Data Available

Transcripts for SDC4P Gene

mRNA/cDNA for SDC4P Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDC4P Gene

No ASD Table

Relevant External Links for SDC4P Gene

GeneLoc Exon Structure for
SDC4P

Expression for SDC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SDC4P Gene

mRNA differential expression in normal tissues according to GTEx for SDC4P Gene

This gene is overexpressed in Liver (x39.7) and Testis (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SDC4P

SOURCE GeneReport for Unigene cluster for SDC4P Gene:

Hs.534651
genes like me logo Genes that share expression patterns with SDC4P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDC4P Gene

Orthologs for SDC4P Gene

Evolution for SDC4P Gene

ENSEMBL:
Gene Tree for SDC4P (if available)
TreeFam:
Gene Tree for SDC4P (if available)

No data available for Orthologs for SDC4P Gene

Paralogs for SDC4P Gene

No data available for Paralogs for SDC4P Gene

Variants for SDC4P Gene

Structural Variations from Database of Genomic Variants (DGV) for SDC4P Gene

Variant ID Type Subtype PubMed ID
nsv1110864 OTHER inversion 24896259
nsv829171 CNV loss 20364138

Additional Variant Information for SDC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDC4P

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SDC4P Gene

Disorders for SDC4P Gene

Additional Disease Information for SDC4P

No disorders were found for SDC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDC4P Gene

Publications for SDC4P Gene

  1. Identification of a syndecan 4 pseudogene. (PMID: 12652906) Spring SC … Terman BI (DNA sequence : the journal of DNA sequencing and mapping 2002) 2 3 23
  2. Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N … Tung JY (BMC medical genetics 2012) 3

Products for SDC4P Gene

Sources for SDC4P Gene