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Aliases for SCN2B Gene

Aliases for SCN2B Gene

  • Sodium Voltage-Gated Channel Beta Subunit 2 2 3 5
  • Sodium Channel, Voltage-Gated, Type II, Beta Polypeptide 2 3
  • Sodium Channel, Voltage Gated, Type II Beta Subunit 2 3
  • Sodium Channel, Voltage-Gated, Type II, Beta Subunit 2
  • Neuronal Voltage-Gated Sodium Channel Beta 2 Subunit 3
  • Sodium Channel, Voltage-Gated, Type II, Beta 2
  • Sodium Channel Subunit Beta-2 3
  • ATFB14 3

External Ids for SCN2B Gene

Previous GeneCards Identifiers for SCN2B Gene

  • GC11M120392
  • GC11M119545
  • GC11M118070
  • GC11M117573
  • GC11M117542
  • GC11M118033
  • GC11M113967

Summaries for SCN2B Gene

Entrez Gene Summary for SCN2B Gene

  • The protein encoded by this gene is the beta 2 subunit of the type II voltage-gated sodium channel. The encoded protein is involved in cell-cell adhesion and cell migration. Defects in this gene can be a cause of Brugada Syndrome, atrial fibrillation, or sudden infant death syndrome. [provided by RefSeq, Jul 2015]

GeneCards Summary for SCN2B Gene

SCN2B (Sodium Voltage-Gated Channel Beta Subunit 2) is a Protein Coding gene. Diseases associated with SCN2B include Atrial Fibrillation, Familial, 14 and Familial Atrial Fibrillation. Among its related pathways are Cardiac conduction and L1CAM interactions. Gene Ontology (GO) annotations related to this gene include sodium channel regulator activity and voltage-gated sodium channel activity involved in cardiac muscle cell action potential. An important paralog of this gene is SCN4B.

UniProtKB/Swiss-Prot for SCN2B Gene

  • Crucial in the assembly, expression, and functional modulation of the heterotrimeric complex of the sodium channel. The subunit beta-2 causes an increase in the plasma membrane surface area and in its folding into microvilli. Interacts with TNR may play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier (By similarity).

Tocris Summary for SCN2B Gene

  • Voltage-gated sodium channels (NaV) are responsible for action potential initiation and propagation in excitable cells, including nerve, muscle, and neuroendocrine cell types. They are also expressed at low levels in non-excitable cells, where their physiological role is unclear.

Gene Wiki entry for SCN2B Gene

Additional gene information for SCN2B Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCN2B Gene

Genomics for SCN2B Gene

GeneHancer (GH) Regulatory Elements for SCN2B Gene

Promoters and enhancers for SCN2B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I118174 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 562.6 +1.0 972 2.1 ELF3 ZFP64 RAD21 RFX5 YY1 ZNF335 ZNF366 RXRA CEBPB ZNF398 SCN2B GC11P118174 SCN4B CD3D CD3G CD3E TMPRSS4 FXYD6 FXYD6-FXYD2 TTC36
GH11I118180 Enhancer 1.1 FANTOM5 Ensembl ENCODE 18.7 -3.9 -3885 0.8 MXI1 PKNOX1 SAP130 ARID4B SIN3A ZNF48 ZNF121 ZNF335 ZNF341 PRDM10 SCN2B SCN4B FXYD6 DSCAML1 TMEM25 HSPE1P18
GH11I118223 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 9.9 -50.1 -50080 7.3 PKNOX1 BMI1 BATF IRF4 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 JAML PIR47429 MPZL3 SCN2B MPZL2 GC11M118231 GC11M118234 PIR54688
GH11I118145 Promoter/Enhancer 1.5 Ensembl ENCODE 11.8 +30.9 30889 0.8 PKNOX1 ATF1 ARID4B SIN3A DMAP1 GLIS2 ZNF207 ZNF143 KLF7 ATF7 SCN2B CD3D CD3G CD3E TMPRSS4 TMPRSS13 SCN4B PIR33394
GH11I118238 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.5 -63.9 -63888 5.1 FOXA2 PKNOX1 CLOCK SMAD1 ARNT NEUROD1 SIN3A IRF4 YY1 ZNF766 JAML MPZL3 ENSG00000254909 UBE4A BCL9L ARCN1 RPL23AP64 ENSG00000254428 DPAGT1 CD3E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCN2B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCN2B gene promoter:

Genomic Locations for SCN2B Gene

Genomic Locations for SCN2B Gene
chr11:118,161,951-118,176,673
(GRCh38/hg38)
Size:
14,723 bases
Orientation:
Minus strand
chr11:118,032,666-118,047,388
(GRCh37/hg19)

Genomic View for SCN2B Gene

Genes around SCN2B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCN2B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCN2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCN2B Gene

Proteins for SCN2B Gene

  • Protein details for SCN2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60939-SCN2B_HUMAN
    Recommended name:
    Sodium channel subunit beta-2
    Protein Accession:
    O60939
    Secondary Accessions:
    • O75302
    • Q9UNN3

    Protein attributes for SCN2B Gene

    Size:
    215 amino acids
    Molecular mass:
    24326 Da
    Quaternary structure:
    • The voltage-sensitive sodium channel consists of an ion conducting pore forming alpha-subunit regulated by one or more beta-1, beta-2, beta-3 and/or beta-4 subunits. Beta-1 and beta-3 are non-covalently associated with alpha, while beta-2 and beta-4 are covalently linked by disulfide bonds (By similarity).

    Three dimensional structures from OCA and Proteopedia for SCN2B Gene

neXtProt entry for SCN2B Gene

Post-translational modifications for SCN2B Gene

  • Glycosylation at isoforms=42, isoforms=66, and posLast=7474

Other Protein References for SCN2B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SCN2B Gene

Domains & Families for SCN2B Gene

Gene Families for SCN2B Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • FDA approved drug targets
  • Predicted membrane proteins
  • Transporters

Suggested Antigen Peptide Sequences for SCN2B Gene

Graphical View of Domain Structure for InterPro Entry

O60939

UniProtKB/Swiss-Prot:

SCN2B_HUMAN :
  • Belongs to the sodium channel auxiliary subunit SCN2B (TC 8.A.17) family.
Family:
  • Belongs to the sodium channel auxiliary subunit SCN2B (TC 8.A.17) family.
genes like me logo Genes that share domains with SCN2B: view

Function for SCN2B Gene

Molecular function for SCN2B Gene

GENATLAS Biochemistry:
sodium voltage-gated channel,type II,auxilliary subunit beta homolog to rat contactin,involved in the initiation and conduction of electrical impulses in nerves,highly similar to myelin protein zero may be involved in demyelinating diseases,CMT2B excluded
UniProtKB/Swiss-Prot Function:
Crucial in the assembly, expression, and functional modulation of the heterotrimeric complex of the sodium channel. The subunit beta-2 causes an increase in the plasma membrane surface area and in its folding into microvilli. Interacts with TNR may play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier (By similarity).

Phenotypes From GWAS Catalog for SCN2B Gene

Gene Ontology (GO) - Molecular Function for SCN2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005244 voltage-gated ion channel activity IEA --
GO:0005248 voltage-gated sodium channel activity IEA --
GO:0005272 sodium channel activity IEA --
GO:0017080 sodium channel regulator activity IDA 19808477
GO:0086006 voltage-gated sodium channel activity involved in cardiac muscle cell action potential IMP 19808477
genes like me logo Genes that share ontologies with SCN2B: view
genes like me logo Genes that share phenotypes with SCN2B: view

Human Phenotype Ontology for SCN2B Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for SCN2B Gene

MGI Knock Outs for SCN2B:

Clone Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for SCN2B Gene

Localization for SCN2B Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCN2B Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCN2B gene
Compartment Confidence
plasma membrane 5
extracellular 3
mitochondrion 1
endoplasmic reticulum 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SCN2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001518 voltage-gated sodium channel complex TAS 9295116
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SCN2B: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for SCN2B Gene

Pathways & Interactions for SCN2B Gene

genes like me logo Genes that share pathways with SCN2B: view

Pathways by source for SCN2B Gene

Gene Ontology (GO) - Biological Process for SCN2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006814 sodium ion transport IEA --
GO:0007268 chemical synaptic transmission TAS 9295116
GO:0007399 nervous system development IEA --
genes like me logo Genes that share ontologies with SCN2B: view

No data available for SIGNOR curated interactions for SCN2B Gene

Drugs & Compounds for SCN2B Gene

(7) Drugs for SCN2B Gene - From: DrugBank, DGIdb, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Zonisamide Approved, Investigational Pharma Target, inhibitor, blocker Antiepileptic with anticonvulsant and mechanistic effect 69
Brivaracetam Approved, Investigational Pharma Target, inhibitor ligand for SV2A, selective and high-affinity 0
Valproic Acid Approved, Investigational Pharma Target HDAC1 inhibitor, Histone deacetylase (HDAC)inhibitors 333

(2) Additional Compounds for SCN2B Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5

(3) Tocris Compounds for SCN2B Gene

Compound Action Cas Number
Amiloride hydrochloride Na+ channel blocker; also I2 imidazoline ligand 2016-88-8
Carbamazepine Inhibitor of neuronal voltage-gated Na+ channels; anticonvulsant 298-46-4
Vinpocetine Na+ channel blocker 42971-09-5
genes like me logo Genes that share compounds with SCN2B: view

Transcripts for SCN2B Gene

mRNA/cDNA for SCN2B Gene

(1) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(67) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCN2B Gene

Sodium channel, voltage-gated, type II, beta subunit:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCN2B Gene

No ASD Table

Relevant External Links for SCN2B Gene

GeneLoc Exon Structure for
SCN2B
ECgene alternative splicing isoforms for
SCN2B

Expression for SCN2B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCN2B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SCN2B Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.6), Brain - Cortex (x5.6), Brain - Cerebellar Hemisphere (x5.5), Brain - Cerebellum (x5.3), Brain - Anterior cingulate cortex (BA24) (x4.8), and Brain - Nucleus accumbens (basal ganglia) (x4.7).

Protein differential expression in normal tissues from HIPED for SCN2B Gene

This gene is overexpressed in Frontal cortex (60.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SCN2B Gene



Protein tissue co-expression partners for SCN2B Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SCN2B Gene:

SCN2B

SOURCE GeneReport for Unigene cluster for SCN2B Gene:

Hs.129783

mRNA Expression by UniProt/SwissProt for SCN2B Gene:

O60939-SCN2B_HUMAN
Tissue specificity: Brain specific.

Evidence on tissue expression from TISSUES for SCN2B Gene

  • Nervous system(4.7)
  • Heart(4.3)

Phenotype-based relationships between genes and organs from Gene ORGANizer for SCN2B Gene

Germ Layers:
  • ectoderm
  • mesoderm
Systems:
  • cardiovascular
  • nervous
Regions:
Head and neck:
  • brain
  • ear
  • head
Thorax:
  • heart
  • heart valve
General:
  • blood
  • blood vessel
  • coagulation system
genes like me logo Genes that share expression patterns with SCN2B: view

Orthologs for SCN2B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCN2B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCN2B 33 34
  • 99.38 (n)
cow
(Bos Taurus)
Mammalia SCN2B 33 34
  • 92.4 (n)
dog
(Canis familiaris)
Mammalia SCN2B 33 34
  • 91.16 (n)
rat
(Rattus norvegicus)
Mammalia Scn2b 33
  • 88.53 (n)
mouse
(Mus musculus)
Mammalia Scn2b 33 16 34
  • 87.75 (n)
oppossum
(Monodelphis domestica)
Mammalia SCN2B 34
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCN2B 33 34
  • 77.05 (n)
lizard
(Anolis carolinensis)
Reptilia SCN2B 34
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia scn2b 33
  • 65.7 (n)
zebrafish
(Danio rerio)
Actinopterygii scn2b 33 34
  • 60.33 (n)
Species where no ortholog for SCN2B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCN2B Gene

ENSEMBL:
Gene Tree for SCN2B (if available)
TreeFam:
Gene Tree for SCN2B (if available)

Paralogs for SCN2B Gene

Paralogs for SCN2B Gene

(1) SIMAP similar genes for SCN2B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SCN2B: view

Variants for SCN2B Gene

Sequence variations from dbSNP and Humsavar for SCN2B Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1085307094 uncertain-significance, Atrial fibrillation, familial, 14 118,167,088(-) T/G splice_acceptor_variant
rs115353159 uncertain-significance, Atrial fibrillation, familial, 14, not specified 118,166,957(-) G/A/C coding_sequence_variant, missense_variant
rs17121818 uncertain-significance, Atrial fibrillation, familial, 14 118,168,682(-) C/T coding_sequence_variant, missense_variant
rs17121819 pathogenic, uncertain-significance, Atrial fibrillation, familial, 14, not specified, Atrial fibrillation, familial, 14 (ATFB14) [MIM:615378] 118,168,740(-) G/A coding_sequence_variant, missense_variant
rs200842493 likely-benign, Atrial fibrillation, familial, 14 118,168,301(-) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SCN2B Gene

Variant ID Type Subtype PubMed ID
nsv519116 CNV loss 19592680

Variation tolerance for SCN2B Gene

Residual Variation Intolerance Score: 42.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.41; 8.92% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SCN2B Gene

Human Gene Mutation Database (HGMD)
SCN2B
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCN2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCN2B Gene

Disorders for SCN2B Gene

MalaCards: The human disease database

(8) MalaCards diseases for SCN2B Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
atrial fibrillation, familial, 14
  • atfb14
familial atrial fibrillation
  • atrial fibrillation, familial, 1
atrial fibrillation
  • a-fib
brugada syndrome
  • bangungut
right bundle branch block
  • right bundle branch block with left posterior fascicular block
- elite association - COSMIC cancer census association via MalaCards
Search SCN2B in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

SCN2B_HUMAN
  • Atrial fibrillation, familial, 14 (ATFB14) [MIM:615378]: A familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure. {ECO:0000269 PubMed:19808477}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Note=Genetic variations in SCN2B may be involved in Brugada syndrome (PubMed:23559163). This tachyarrhythmia is characterized by right bundle branch block and ST segment elevation on an electrocardiogram (ECG). It can cause the ventricles to beat so fast that the blood is prevented from circulating efficiently in the body. When this situation occurs, the individual will faint and may die in a few minutes if the heart is not reset. {ECO:0000269 PubMed:23559163}.

Additional Disease Information for SCN2B

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SCN2B: view

No data available for Genatlas for SCN2B Gene

Publications for SCN2B Gene

  1. Mutations in sodium channel β1- and β2-subunits associated with atrial fibrillation. (PMID: 19808477) Watanabe H … Roden DM (Circulation. Arrhythmia and electrophysiology 2009) 3 4 44 58
  2. A missense mutation in the sodium channel β2 subunit reveals SCN2B as a new candidate gene for Brugada syndrome. (PMID: 23559163) Riuró H … Brugada R (Human mutation 2013) 3 4 58
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 58

Products for SCN2B Gene

Sources for SCN2B Gene

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