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Aliases for SCHLAP1 Gene

Subcategory (RNA class) for SCHLAP1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SCHLAP1 Gene

  • SWI/SNF Complex Antagonist Associated With Prostate Cancer 1 (Non-Protein Coding) 2 3 5
  • Second Chromosome Locus Associated With Prostate 1 2 3
  • Long Intergenic Non-Protein Coding RNA 913 2 3
  • Prostate Cancer Associated Transcript 11 2 3
  • LINC00913 3
  • PCAT114 3
  • PCAT11 3

External Ids for SCHLAP1 Gene

Previous HGNC Symbols for SCHLAP1 Gene

  • LINC00913

Previous GeneCards Identifiers for SCHLAP1 Gene

  • GC02U903022

Summaries for SCHLAP1 Gene

GeneCards Summary for SCHLAP1 Gene

SCHLAP1 (SWI/SNF Complex Antagonist Associated With Prostate Cancer 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SCHLAP1 include Prostate Cancer.

Additional gene information for SCHLAP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCHLAP1 Gene

Genomics for SCHLAP1 Gene

GeneHancer (GH) Regulatory Elements for SCHLAP1 Gene

Promoters and enhancers for SCHLAP1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I180676 Enhancer 0.6 ENCODE 0.4 -14.6 -14599 1.5 RXRA MAX REST RAD21 NR2F2 YY1 JUND ATF3 HNF4G HNF4A SCHLAP1 LOC105373770 ENSG00000270289
GH02I180728 Enhancer 0.8 Ensembl ENCODE 0.3 +37.3 37299 1.3 FOSL1 JUND ZNF362 PRDM6 JUN FOSL2 FOS EP300 TRIM28 LOC105373771 SCHLAP1 ENSG00000279559
GH02I180707 Enhancer 0.6 ENCODE 0.4 +15.9 15915 0.2 ZNF449 JUN USF2 MAX CEBPB CEBPG EP300 RAD21 RFX5 FOSL1 LOC105373770 LOC105373771 SCHLAP1
GH02I180761 Enhancer 1 Ensembl ENCODE 0.2 +69.4 69374 0.2 ELF3 FOXA2 BATF RAD21 RARA FOS CREM MIXL1 CEBPB TGIF2 LOC105373771 ENSG00000279559 SCHLAP1
GH02I180763 Enhancer 0.9 ENCODE 0.2 +71.7 71655 0.1 ELF3 FOXA2 MLX ARID4B RAD21 THRB ZSCAN9 RARA SMARCC2 CREM LOC105373771 ENSG00000279559 SCHLAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCHLAP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCHLAP1 Gene

Genomic Locations for SCHLAP1 Gene
224,836 bases
Plus strand

Genomic View for SCHLAP1 Gene

Genes around SCHLAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCHLAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCHLAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCHLAP1 Gene

Proteins for SCHLAP1 Gene

Post-translational modifications for SCHLAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCHLAP1 Gene

Domains & Families for SCHLAP1 Gene

Gene Families for SCHLAP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCHLAP1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCHLAP1 Gene

Function for SCHLAP1 Gene

Phenotypes From GWAS Catalog for SCHLAP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCHLAP1 Gene

Localization for SCHLAP1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCHLAP1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCHLAP1 Gene

Pathways & Interactions for SCHLAP1 Gene

SuperPathways for SCHLAP1 Gene

No Data Available

Interacting Proteins for SCHLAP1 Gene

Gene Ontology (GO) - Biological Process for SCHLAP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCHLAP1 Gene

Drugs & Compounds for SCHLAP1 Gene

No Compound Related Data Available

Transcripts for SCHLAP1 Gene

mRNA/cDNA for SCHLAP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCHLAP1 Gene

No ASD Table

Relevant External Links for SCHLAP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCHLAP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCHLAP1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCHLAP1 Gene

Orthologs for SCHLAP1 Gene

Evolution for SCHLAP1 Gene

Gene Tree for SCHLAP1 (if available)
Gene Tree for SCHLAP1 (if available)

No data available for Orthologs for SCHLAP1 Gene

Paralogs for SCHLAP1 Gene

No data available for Paralogs for SCHLAP1 Gene

Variants for SCHLAP1 Gene

Sequence variations from dbSNP and Humsavar for SCHLAP1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000016472 -- 180,803,359(+) A/G intron_variant
rs1000016968 -- 180,846,633(+) A/T intron_variant
rs1000017571 -- 180,868,931(+) G/C intron_variant
rs1000022908 -- 180,799,944(+) G/T intron_variant
rs1000033018 -- 180,888,845(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SCHLAP1 Gene

Variant ID Type Subtype PubMed ID
esv1004332 CNV deletion 20482838
esv1505605 CNV deletion 17803354
esv1564115 CNV insertion 17803354
esv1567921 CNV deletion 17803354
esv3364161 CNV duplication 20981092
esv3893513 CNV loss 25118596
nsv1072053 CNV deletion 25765185
nsv1077898 CNV duplication 25765185
nsv1114151 CNV deletion 24896259
nsv1115584 CNV duplication 24896259
nsv1138870 CNV deletion 24896259
nsv821835 CNV gain 20364138
nsv834475 CNV gain 17160897
nsv963752 CNV duplication 23825009

Additional Variant Information for SCHLAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCHLAP1 Gene

Disorders for SCHLAP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCHLAP1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SCHLAP1

genes like me logo Genes that share disorders with SCHLAP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCHLAP1 Gene

Publications for SCHLAP1 Gene

  1. Linking the SWI/SNF complex to prostate cancer. (PMID: 24165726) Lee RS … Roberts CW (Nature genetics 2013) 2 3 58
  2. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. (PMID: 24076601) Prensner JR … Chinnaiyan AM (Nature genetics 2013) 2 3 58
  3. Inhibiting malignant phenotypes of the bladder cancer cells by silencing long noncoding RNA SChLAP1. (PMID: 26861061) Zhang J … Li M (International urology and nephrology 2016) 3 58
  4. A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer. (PMID: 25499224) Mehra R … Chinnaiyan AM (Neoplasia (New York, N.Y.) 2014) 3 58
  5. RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1. (PMID: 25456366) Prensner JR … Feng FY (The Lancet. Oncology 2014) 3 58

Products for SCHLAP1 Gene

Sources for SCHLAP1 Gene

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