Aliases for SCGB2B3P Gene

Aliases for SCGB2B3P Gene

  • Secretoglobin Family 2B Member 3, Pseudogene 2 3 5
  • Secretoglobin-Like Pseudogene 3
  • SCGB4A3P 3
  • C2B 3

External Ids for SCGB2B3P Gene

Previous GeneCards Identifiers for SCGB2B3P Gene

  • GC19P035137

Summaries for SCGB2B3P Gene

GeneCards Summary for SCGB2B3P Gene

SCGB2B3P (Secretoglobin Family 2B Member 3, Pseudogene) is a Pseudogene.

Additional gene information for SCGB2B3P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SCGB2B3P Gene

Genomics for SCGB2B3P Gene

GeneHancer (GH) Regulatory Elements for SCGB2B3P Gene

Promoters and enhancers for SCGB2B3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J034645 Enhancer 0.7 Ensembl ENCODE 500.7 +0.1 137 1.2 MXI1 GATA3 RCOR1 CTCF E2F1 CHD2 GATA2 FOXA1 ZSCAN4 CBFA2T3 ENSG00000279971 SCGB2B3P lnc-ZNF302-4 ZNF181 ZNF302 piR-37972-345 SCGB2B2 lnc-SCGB2B2-1
GH19J034655 Enhancer 0.6 Ensembl 0.4 +10.1 10139 0.4 TEAD1 ZBTB26 NR2F2 SMAD4 BCL6 RXRA CEBPB NR2F6 HNF4A TEAD3 piR-37972-345 piR-59769-306 ZNF302 SCGB1B2P SCGB2B3P SCGB2B2 lnc-SCGB2B2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCGB2B3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCGB2B3P Gene

Genomic Locations for SCGB2B3P Gene
chr19:34,645,662-34,646,070
(GRCh38/hg38)
Size:
409 bases
Orientation:
Plus strand
chr19:35,136,289-35,137,743
(GRCh37/hg19)
Size:
1,455 bases
Orientation:
Plus strand

Genomic View for SCGB2B3P Gene

Genes around SCGB2B3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB2B3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB2B3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB2B3P Gene

Proteins for SCGB2B3P Gene

Post-translational modifications for SCGB2B3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB2B3P Gene

Domains & Families for SCGB2B3P Gene

Gene Families for SCGB2B3P Gene

genes like me logo Genes that share domains with SCGB2B3P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCGB2B3P Gene

Function for SCGB2B3P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB2B3P Gene

Localization for SCGB2B3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCGB2B3P Gene

Pathways & Interactions for SCGB2B3P Gene

PathCards logo

SuperPathways for SCGB2B3P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SCGB2B3P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCGB2B3P Gene

Drugs & Compounds for SCGB2B3P Gene

No Compound Related Data Available

Transcripts for SCGB2B3P Gene

mRNA/cDNA for SCGB2B3P Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB2B3P Gene

No ASD Table

Relevant External Links for SCGB2B3P Gene

GeneLoc Exon Structure for
SCGB2B3P

Expression for SCGB2B3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCGB2B3P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCGB2B3P

SOURCE GeneReport for Unigene cluster for SCGB2B3P Gene:

Hs.679909
genes like me logo Genes that share expression patterns with SCGB2B3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB2B3P Gene

Orthologs for SCGB2B3P Gene

Evolution for SCGB2B3P Gene

ENSEMBL:
Gene Tree for SCGB2B3P (if available)
TreeFam:
Gene Tree for SCGB2B3P (if available)

No data available for Orthologs for SCGB2B3P Gene

Paralogs for SCGB2B3P Gene

No data available for Paralogs for SCGB2B3P Gene

Variants for SCGB2B3P Gene

Structural Variations from Database of Genomic Variants (DGV) for SCGB2B3P Gene

Variant ID Type Subtype PubMed ID
esv2758756 CNV gain 17122850
esv3329051 OTHER inversion 20981092
esv5547 OTHER inversion 19470904
nsv1064154 CNV loss 25217958

Additional Variant Information for SCGB2B3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB2B3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SCGB2B3P Gene

Disorders for SCGB2B3P Gene

Additional Disease Information for SCGB2B3P

No disorders were found for SCGB2B3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCGB2B3P Gene

Publications for SCGB2B3P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for SCGB2B3P Gene

Sources for SCGB2B3P Gene