Aliases for SCGB1D5P Gene

Aliases for SCGB1D5P Gene

  • Secretoglobin Family 1D Member 5, Pseudogene 2 3 5
  • Secretoglobin, Family 1D, Member 1 Pseudogene 1 2 3
  • SCGB1D1P1 3
  • SCGB1D5P 5

External Ids for SCGB1D5P Gene

Previous HGNC Symbols for SCGB1D5P Gene

  • SCGB1D1P1

Previous GeneCards Identifiers for SCGB1D5P Gene

  • GC04M166440

Summaries for SCGB1D5P Gene

GeneCards Summary for SCGB1D5P Gene

SCGB1D5P (Secretoglobin Family 1D Member 5, Pseudogene) is a Pseudogene.

Additional gene information for SCGB1D5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SCGB1D5P Gene

Genomics for SCGB1D5P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SCGB1D5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J165506 Enhancer 0.8 Ensembl ENCODE 0.4 +10.4 10400 2.6 PRDM1 RXRB ZBTB26 CEBPB ZNF316 FOXA2 MAFF MAFG MAX MXI1 LOC105377520 HSALNG0038351 SCGB1D5P lnc-GK3P-5 CPE TLL1
GH04J165522 Enhancer 0.5 Ensembl 0.4 -6.0 -6000 3 CEBPB JUND EP300 SPI1 NFIL3 HNF4A HLF SCGB1D5P lnc-GK3P-5 NOL8P1 CPE TLL1
GH04J165515 Enhancer 0.3 Ensembl 0.7 +2.1 2100 0.8 CEBPB SCGB1D5P lnc-GK3P-5 LOC105377520 CPE TLL1
GH04J165512 Enhancer 0.3 Ensembl 0.7 +4.5 4500 1.2 GATA2 SCGB1D5P lnc-GK3P-5 LOC105377520 CPE TLL1
GH04J165537 Enhancer 0.4 Ensembl 0.4 -20.0 -19999 0.2 CTCF TRIM22 RAD21 TLL1 NOL8P1 SCGB1D5P lnc-GK3P-5 CPE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCGB1D5P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SCGB1D5P Gene

Genomic Locations for SCGB1D5P Gene
chr4:165,517,255-165,517,501
(GRCh38/hg38)
Size:
247 bases
Orientation:
Minus strand
chr4:166,438,407-166,438,653
(GRCh37/hg19)
Size:
247 bases
Orientation:
Minus strand

Genomic View for SCGB1D5P Gene

Genes around SCGB1D5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB1D5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB1D5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB1D5P Gene

Proteins for SCGB1D5P Gene

Post-translational modifications for SCGB1D5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB1D5P Gene

Domains & Families for SCGB1D5P Gene

Gene Families for SCGB1D5P Gene

genes like me logo Genes that share domains with SCGB1D5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCGB1D5P Gene

Function for SCGB1D5P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB1D5P Gene

Localization for SCGB1D5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCGB1D5P Gene

Pathways & Interactions for SCGB1D5P Gene

PathCards logo

SuperPathways for SCGB1D5P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCGB1D5P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCGB1D5P Gene

Drugs & Compounds for SCGB1D5P Gene

No Compound Related Data Available

Transcripts for SCGB1D5P Gene

mRNA/cDNA for SCGB1D5P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB1D5P Gene

No ASD Table

Relevant External Links for SCGB1D5P Gene

GeneLoc Exon Structure for
SCGB1D5P

Expression for SCGB1D5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCGB1D5P Gene

genes like me logo Genes that share expression patterns with SCGB1D5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB1D5P Gene

Orthologs for SCGB1D5P Gene

Evolution for SCGB1D5P Gene

ENSEMBL:
Gene Tree for SCGB1D5P (if available)
TreeFam:
Gene Tree for SCGB1D5P (if available)

No data available for Orthologs for SCGB1D5P Gene

Paralogs for SCGB1D5P Gene

No data available for Paralogs for SCGB1D5P Gene

Variants for SCGB1D5P Gene

Additional Variant Information for SCGB1D5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB1D5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCGB1D5P Gene

Disorders for SCGB1D5P Gene

No disorders were found for SCGB1D5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SCGB1D5P Gene

Publications for SCGB1D5P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3

Products for SCGB1D5P Gene

Sources for SCGB1D5P Gene