Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCGB1B2P Gene

Aliases for SCGB1B2P Gene

  • Secretoglobin Family 1B Member 2, Pseudogene 2 3 5
  • CTD-2378H7.2 3
  • SCGB4A1P 3

External Ids for SCGB1B2P Gene

Previous GeneCards Identifiers for SCGB1B2P Gene

  • GC19M035068

Summaries for SCGB1B2P Gene

GeneCards Summary for SCGB1B2P Gene

SCGB1B2P (Secretoglobin Family 1B Member 2, Pseudogene) is a Pseudogene.

Additional gene information for SCGB1B2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB1B2P Gene

Genomics for SCGB1B2P Gene

GeneHancer (GH) Regulatory Elements for SCGB1B2P Gene

Promoters and enhancers for SCGB1B2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I035430 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 4.8 -853.5 -853506 1.6 HDAC1 MEIS2 PKNOX1 ZNF280D MAFG ZNF518A ZNF610 HDAC2 ZNF169 ZNF548 NFKBID ZNF792 FFAR2 ZFP14 RBM42 TYROBP KMT2B KRTDAP DMKN HAUS5
GH19I034594 Enhancer 0.4 ENCODE 0.4 -17.2 -17170 0.2 HNF4A ZNF433 ZNF599 ENSG00000271049 TMEM147-AS1 SCGB1B2P GC19M034620 GC19M034621 SCGB2B2
GH19I034609 Enhancer 0.2 FANTOM5 0.3 -32.1 -32054 0.3 ZNF181 CHST8 ZNF302 GC19M034620 GC19M034621 SCGB1B2P SCGB2B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCGB1B2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCGB1B2P Gene

Genomic Locations for SCGB1B2P Gene
chr19:34,576,733-34,577,701
(GRCh38/hg38)
Size:
969 bases
Orientation:
Minus strand
chr19:35,067,638-35,068,606
(GRCh37/hg19)

Genomic View for SCGB1B2P Gene

Genes around SCGB1B2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB1B2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB1B2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB1B2P Gene

Proteins for SCGB1B2P Gene

Post-translational modifications for SCGB1B2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB1B2P Gene

Domains & Families for SCGB1B2P Gene

Gene Families for SCGB1B2P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCGB1B2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCGB1B2P Gene

Function for SCGB1B2P Gene

Phenotypes From GWAS Catalog for SCGB1B2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB1B2P Gene

Localization for SCGB1B2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCGB1B2P Gene

Pathways & Interactions for SCGB1B2P Gene

SuperPathways for SCGB1B2P Gene

No Data Available

Interacting Proteins for SCGB1B2P Gene

Gene Ontology (GO) - Biological Process for SCGB1B2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCGB1B2P Gene

Drugs & Compounds for SCGB1B2P Gene

No Compound Related Data Available

Transcripts for SCGB1B2P Gene

mRNA/cDNA for SCGB1B2P Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCGB1B2P Gene

Secretoglobin, family 1B, member 2, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB1B2P Gene

No ASD Table

Relevant External Links for SCGB1B2P Gene

GeneLoc Exon Structure for
SCGB1B2P
ECgene alternative splicing isoforms for
SCGB1B2P

Expression for SCGB1B2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCGB1B2P Gene

mRNA differential expression in normal tissues according to GTEx for SCGB1B2P Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.4) and Skin - Not Sun Exposed (Suprapubic) (x14.2).

NURSA nuclear receptor signaling pathways regulating expression of SCGB1B2P Gene:

SCGB1B2P

SOURCE GeneReport for Unigene cluster for SCGB1B2P Gene:

Hs.686754
genes like me logo Genes that share expression patterns with SCGB1B2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB1B2P Gene

Orthologs for SCGB1B2P Gene

Evolution for SCGB1B2P Gene

ENSEMBL:
Gene Tree for SCGB1B2P (if available)
TreeFam:
Gene Tree for SCGB1B2P (if available)

No data available for Orthologs for SCGB1B2P Gene

Paralogs for SCGB1B2P Gene

No data available for Paralogs for SCGB1B2P Gene

Variants for SCGB1B2P Gene

Sequence variations from dbSNP and Humsavar for SCGB1B2P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000081389 -- 34,613,281(-) T/A intron_variant
rs1000099324 -- 34,655,141(-) C/T intron_variant
rs1000217505 -- 34,658,877(-) C/T intron_variant
rs1000219234 -- 34,605,684(-) T/C intron_variant
rs1000267270 -- 34,576,697(-) T/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCGB1B2P Gene

Variant ID Type Subtype PubMed ID
esv5547 OTHER inversion 19470904
esv3329051 OTHER inversion 20981092
esv2718484 CNV deletion 23290073

Additional Variant Information for SCGB1B2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB1B2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCGB1B2P Gene

Disorders for SCGB1B2P Gene

Additional Disease Information for SCGB1B2P

No disorders were found for SCGB1B2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCGB1B2P Gene

Publications for SCGB1B2P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3 58

Products for SCGB1B2P Gene

Sources for SCGB1B2P Gene

Content
Loading form....