Aliases for SCG5-AS1 Gene

Subcategory (RNA class) for SCG5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SCG5-AS1 Gene

  • SCG5 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG016459.2 91
  • HSALNG0104871 164
  • AC123768.1 5
  • Lnc-FMN1-3 165

External Ids for SCG5-AS1 Gene

Additional External Ids for SCG5-AS1 Gene

Summaries for SCG5-AS1 Gene

GeneCards Summary for SCG5-AS1 Gene

SCG5-AS1 (SCG5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SCG5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SCG5-AS1 Gene

Genomics for SCG5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SCG5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCG5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SCG5-AS1 Gene

Genomic Locations for SCG5-AS1 Gene
chr15:32,656,084-32,673,066
(GRCh38/hg38)
Size:
16,983 bases
Orientation:
Minus strand
chr15:32,948,285-32,965,266
(GRCh37/hg19)
Size:
16,982 bases
Orientation:
Minus strand

Genomic View for SCG5-AS1 Gene

Genes around SCG5-AS1 on UCSC Golden Path with GeneCards custom track
SCG5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SCG5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCG5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCG5-AS1 Gene

Proteins for SCG5-AS1 Gene

Post-translational modifications for SCG5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCG5-AS1 Gene

Domains & Families for SCG5-AS1 Gene

Gene Families for SCG5-AS1 Gene

genes like me logo Genes that share domains with SCG5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCG5-AS1 Gene

Function for SCG5-AS1 Gene

Phenotypes From GWAS Catalog for SCG5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCG5-AS1 Gene

Localization for SCG5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCG5-AS1 Gene

Pathways & Interactions for SCG5-AS1 Gene

PathCards logo

SuperPathways for SCG5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCG5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCG5-AS1 Gene

Drugs & Compounds for SCG5-AS1 Gene

No Compound Related Data Available

Transcripts for SCG5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SCG5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000051A98E_9606 lncRNA 461 5

RefSeq: NR_135505,

Ensembl: ENST00000460684 (view in UCSC) , ENST00000632470 (view in UCSC) ,

LncBook: HSALNT0218221,

LNCipedia: lnc-FMN1-3:1,

NONCODE: NONHSAT041520.2,

URS0000237C66_9606 lncRNA 432 4

Ensembl: ENST00000486285 (view in UCSC) , ENST00000633565 (view in UCSC) ,

LncBook: HSALNT0218218,

LNCipedia: lnc-FMN1-3:2,

NONCODE: NONHSAT041519.2,

URS00009B909D_9606 lncRNA 749 1

NONCODE: NONHSAT171413.1,

SCG5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SCG5-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SCG5-AS1 Gene

No ASD Table

Relevant External Links for SCG5-AS1 Gene

GeneLoc Exon Structure for
SCG5-AS1

Expression for SCG5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCG5-AS1 Gene

Orthologs for SCG5-AS1 Gene

Evolution for SCG5-AS1 Gene

ENSEMBL:
Gene Tree for SCG5-AS1 (if available)
TreeFam:
Gene Tree for SCG5-AS1 (if available)

No data available for Orthologs for SCG5-AS1 Gene

Paralogs for SCG5-AS1 Gene

No data available for Paralogs for SCG5-AS1 Gene

Variants for SCG5-AS1 Gene

Additional dbSNP identifiers (rs#s) for SCG5-AS1 Gene

Additional Variant Information for SCG5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCG5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCG5-AS1 Gene

Disorders for SCG5-AS1 Gene

Additional Disease Information for SCG5-AS1

No disorders were found for SCG5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCG5-AS1 Gene

Publications for SCG5-AS1 Gene

No publications were found for SCG5-AS1 Gene.

No data available for Mastermind for SCG5-AS1 Gene

Products for SCG5-AS1 Gene

Sources for SCG5-AS1 Gene