Aliases for SCAT1 Gene

Subcategory (RNA class) for SCAT1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SCAT1 Gene

  • S-Phase Cancer Associated Transcript 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 2081 2 3
  • LINC02081 3 170
  • NONHSAG022897 94
  • HSALNG0119047 169
  • XLOC_012582 3
  • SCAT1 2

External Ids for SCAT1 Gene

Previous HGNC Symbols for SCAT1 Gene

  • LINC02081

Summaries for SCAT1 Gene

GeneCards Summary for SCAT1 Gene

SCAT1 (S-Phase Cancer Associated Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SCAT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SCAT1 Gene

Genomics for SCAT1 Gene

GeneHancer (GH) Regulatory Elements for SCAT1 Gene

Promoters and enhancers for SCAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J078630 Enhancer 1 Ensembl ENCODE 765 +0.7 683 2.5 SP1 POLR2A HLF L3MBTL2 CTCF ELF3 MLLT1 ZNF687 CREM SP5 SCAT1 DNAH17 PGS1 RNU6-638P lnc-DNAH17-3
GH17J078616 Enhancer 0.6 Ensembl ENCODE 12.3 +14.3 14325 2.3 SP1 NRF1 CEBPB SCAT1 DNAH17 RNU6-638P lnc-DNAH17-3
GH17J078601 Enhancer 0.9 ENCODE 0.3 +30.1 30139 1.1 LCORL RBPJ NR2F1 NR2F6 ATF1 CREB1 MIXL1 RERE ELF3 AHR DNAH17 RNU6-638P lnc-DNAH17-3 SCAT1
GH17J078613 Enhancer 0.7 FANTOM5 Ensembl 0.4 +18.7 18655 1.4 HLF MAX CEBPB BHLHE40 CEBPG SOCS3 DNAH17 RNU6-638P PGS1 CYTH1 ENGASE USP36 TMC6 lnc-DNAH17-3 SCAT1
GH17J078628 Enhancer 0.3 Ensembl 0.6 +3.7 3654 0.6 TEAD4 CBFA2T3 SCAT1 lnc-DNAH17-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCAT1 Gene

Genomic Locations for SCAT1 Gene
chr17:78,605,233-78,632,155
(GRCh38/hg38)
Size:
26,923 bases
Orientation:
Minus strand
chr17:76,613,471-76,628,139
(GRCh37/hg19)
Size:
14,669 bases
Orientation:
Minus strand

Genomic View for SCAT1 Gene

Genes around SCAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAT1 Gene

Proteins for SCAT1 Gene

No data available for DME Specific Peptides for SCAT1 Gene

Domains & Families for SCAT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCAT1 Gene

Function for SCAT1 Gene

Phenotypes From GWAS Catalog for SCAT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAT1 Gene

Localization for SCAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCAT1 Gene

Pathways & Interactions for SCAT1 Gene

PathCards logo

SuperPathways for SCAT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCAT1 Gene

Drugs & Compounds for SCAT1 Gene

No Compound Related Data Available

Transcripts for SCAT1 Gene

mRNA/cDNA for SCAT1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(34) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) NONCODE transcripts :
(40) RNACentral transcripts :
(2) LncBook transcripts :
(14) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SCAT1 Gene

No ASD Table

Relevant External Links for SCAT1 Gene

GeneLoc Exon Structure for
SCAT1
ECgene alternative splicing isoforms for
SCAT1

Expression for SCAT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAT1 Gene

Orthologs for SCAT1 Gene

Evolution for SCAT1 Gene

ENSEMBL:
Gene Tree for SCAT1 (if available)
TreeFam:
Gene Tree for SCAT1 (if available)

No data available for Orthologs for SCAT1 Gene

Paralogs for SCAT1 Gene

No data available for Paralogs for SCAT1 Gene

Variants for SCAT1 Gene

Sequence variations from dbSNP and Humsavar for SCAT1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000038711 -- 78,632,613(-) C/T upstream_transcript_variant
rs1000040737 -- 78,621,425(-) C/T intron_variant
rs1000344959 -- 78,627,668(-) G/A intron_variant
rs1000689731 -- 78,623,894(-) T/C intron_variant
rs1000740222 -- 78,623,706(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SCAT1 Gene

Variant ID Type Subtype PubMed ID
dgv3285n100 CNV loss 25217958
esv2761981 CNV loss 21179565
nsv1067013 CNV loss 25217958
nsv482920 CNV loss 15286789
nsv515872 CNV gain+loss 19592680

Additional Variant Information for SCAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCAT1 Gene

Disorders for SCAT1 Gene

Additional Disease Information for SCAT1

No disorders were found for SCAT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAT1 Gene

Publications for SCAT1 Gene

  1. PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers. (PMID: 29491376) Ali MM … Kanduri C (Nature communications 2018) 2 3 56
  2. Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis. (PMID: 28125665) Fu Y … Yi Z (PloS one 2017) 2 3 56
  3. Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer. (PMID: 28028307) Fan Q … Liu B (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 56

Products for SCAT1 Gene

Sources for SCAT1 Gene