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SCARNA9L Gene(Pseudogene)

Small Cajal Body-Specific RNA 9-Like

GCID:
GC0XM020139
GIFtS:
9
Genes Participants
UDN Logo

Aliases for SCARNA9L Gene

Subcategory (RNA class) for SCARNA9L Gene

lncRNA

Aliases for SCARNA9L Gene

  • Small Cajal Body-Specific RNA 9-Like 2 3
  • Small Cajal Body-Specific RNA 9-Like (Retrotransposed) 2

External Ids for SCARNA9L Gene

ORGUL Members for SCARNA9L Gene

Previous GeneCards Identifiers for SCARNA9L Gene

  • GC0XU900980
  • GC0XM020066
  • GC0XM020155
  • GC0XM020157
  • GC0XM020161
  • GC0XM020166

Summaries for SCARNA9L Gene

GeneCards Summary for SCARNA9L Gene

SCARNA9L (Small Cajal Body-Specific RNA 9-Like) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SCARNA9L Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA9L Gene

Genomics for SCARNA9L Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SCARNA9L Gene


Top Transcription factor binding sites by QIAGEN in the SCARNA9L gene promoter:

Genomic Locations for SCARNA9L Gene

Genomic Locations for SCARNA9L Gene
chrX:20,136,066-20,136,413
(GRCh38/hg38)
Size:
348 bases
Orientation:
Minus strand
chrX:20,154,184-20,154,531
(GRCh37/hg19)

Genomic View for SCARNA9L Gene

Genes around SCARNA9L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA9L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA9L Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SCARNA9L Gene

Proteins for SCARNA9L Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SCARNA9L Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA9L Gene

Domains & Families for SCARNA9L Gene

Gene Families for SCARNA9L Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA9L: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA9L Gene

Function for SCARNA9L Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA9L Gene

Localization for SCARNA9L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA9L Gene

Pathways & Interactions for SCARNA9L Gene

SuperPathways for SCARNA9L Gene

PathCards logo More details on SuperPathways for SCARNA9L
No Data Available

Interacting Proteins for SCARNA9L Gene

Gene Ontology (GO) - Biological Process for SCARNA9L Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA9L Gene

Drugs & Compounds for SCARNA9L Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SCARNA9L Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA9L Gene

No ASD Table

Relevant External Links for SCARNA9L Gene

GeneLoc Exon Structure for
SCARNA9L
ECgene alternative splicing isoforms for
SCARNA9L

No data available for mRNA/cDNA for SCARNA9L Gene

Expression for SCARNA9L Gene

Products:

  1. Primer
  2. Gene Expression Assay

NURSA nuclear receptor signaling pathways regulating expression of SCARNA9L Gene:

SCARNA9L
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA9L Gene

Orthologs for SCARNA9L Gene

No data available for Orthologs and Evolution for SCARNA9L Gene

Paralogs for SCARNA9L Gene

No data available for Paralogs for SCARNA9L Gene

Variants for SCARNA9L Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SCARNA9L Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1003831566 -- 20,137,215(-) C/T upstream_transcript_variant
rs1004576392 -- 20,138,002(-) T/G upstream_transcript_variant
rs1005955053 -- 20,136,566(-) A/C upstream_transcript_variant
rs1006666743 -- 20,136,171(-) C/A non_coding_transcript_variant
rs1007671329 -- 20,137,834(-) C/T upstream_transcript_variant

Additional Variant Information for SCARNA9L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA9L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA9L Gene

Disorders for SCARNA9L Gene

Additional Disease Information for SCARNA9L

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SCARNA9L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA9L Gene

Publications for SCARNA9L Gene

  1. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SCARNA9L Gene

Sources for SCARNA9L Gene

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