Aliases for SCARNA9L Gene

Data sources for SCARNA9L Gene:

Subcategory (RNA class) for SCARNA9L Gene

lncRNA

Aliases for SCARNA9L Gene

External Ids for SCARNA9L Gene

Previous GeneCards Identifiers for SCARNA9L Gene

  • GC0XU900980
  • GC0XM020066
  • GC0XM020155
  • GC0XM020157
  • GC0XM020161
  • GC0XM020166
  • GC0XM020139
  • GC0XM020138
  • GC0XM020173

Summaries for SCARNA9L Gene

GeneCards Summary for SCARNA9L Gene

SCARNA9L (Small Cajal Body-Specific RNA 9 Like) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for SCARNA9L Gene

Additional gene information for SCARNA9L Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA9L Gene

Genomics for SCARNA9L Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SCARNA9L Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ020135 Enhancer 0.3 Ensembl 250.7 +0.5 512 1 PRDM6 ENSG00000201592 ENSG00000201882 SCARNA9L BCLAF3 SH3KBP1 EIF1AX HSALNG0136919 RF00017-8210 MAP7D2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCARNA9L on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SCARNA9L gene promoter:
  • ATF6
  • CHOP-10
  • FOXO1
  • FOXO1a
  • Max1
  • Nkx6-1
  • Pax-6
  • POU2F1
  • POU2F1a
  • Spz1

Genomic Locations for SCARNA9L Gene

Latest Assembly
chrX:20,136,065-20,136,413
(GRCh38/hg38)
Size:
349 bases
Orientation:
Minus strand

Previous Assembly
chrX:20,154,184-20,154,531
(GRCh37/hg19 by Entrez Gene)
Size:
348 bases
Orientation:
Minus strand

Genomic View for SCARNA9L Gene

Genes around SCARNA9L on UCSC Golden Path with GeneCards custom track
SCARNA9L in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SCARNA9L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA9L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA9L Gene

Proteins for SCARNA9L Gene

Post-translational modifications for SCARNA9L Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA9L Gene

Domains & Families for SCARNA9L Gene

Gene Families for SCARNA9L Gene

genes like me logo Genes that share domains with SCARNA9L: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCARNA9L Gene

Function for SCARNA9L Gene

Phenotypes From GWAS Catalog for SCARNA9L Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA9L Gene

Localization for SCARNA9L Gene

Gene Ontology (GO) - Cellular Components for SCARNA9L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SCARNA9L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SCARNA9L Gene

Pathways & Interactions for SCARNA9L Gene

PathCards logo

SuperPathways for SCARNA9L Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCARNA9L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SCARNA9L: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCARNA9L Gene

Drugs & Compounds for SCARNA9L Gene

No Compound Related Data Available

Transcripts for SCARNA9L Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SCARNA9L Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BDDC_9606 lncRNA 349 4

RefSeq: NR_023358,

LNCipedia: lnc-RPS6KA3-3:1,

NONCODE: NONHSAT136447.2,

snoDB: SNODB1315,

URS0001BF9DCF_9606 lncRNA 348 1

LncBook: HSALNT0280732,

SCARNA9L in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA9L Gene

No ASD Table

Relevant External Links for SCARNA9L Gene

GeneLoc Exon Structure for
SCARNA9L

No data available for mRNA/cDNA for SCARNA9L Gene

Expression for SCARNA9L Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCARNA9L

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA9L Gene

Orthologs for SCARNA9L Gene

No data available for Orthologs and Evolution for SCARNA9L Gene

Paralogs for SCARNA9L Gene

No data available for Paralogs for SCARNA9L Gene

Variants for SCARNA9L Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SCARNA9L Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SCARNA9L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA9L

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA9L Gene

Disorders for SCARNA9L Gene

Additional Disease Information for SCARNA9L

No disorders were found for SCARNA9L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA9L Gene

Publications for SCARNA9L Gene

  1. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3

Products for SCARNA9L Gene

Sources for SCARNA9L Gene