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Aliases for SCARNA9L Gene
Data sources for SCARNA9L Gene:
Subcategory (RNA class) for SCARNA9L Gene
lncRNA
Aliases for SCARNA9L Gene
- Small Cajal Body-Specific RNA 9 Like (HGNC, NCBI Entrez Gene)
- Small Cajal Body-Specific RNA 9-Like (Retrotransposed) (HGNC, NCBI Entrez Gene)
- NONHSAG054127.2 (NONCODE)
- Lnc-RPS6KA3-3 (LNCipedia)
- HSALNG0136920 (LncBook)
- SNODB1315 (snoDB)
Previous GeneCards Identifiers for SCARNA9L Gene
- GC0XU900980
- GC0XM020066
- GC0XM020155
- GC0XM020157
- GC0XM020161
- GC0XM020166
- GC0XM020139
- GC0XM020138
- GC0XM020173
Summaries for SCARNA9L Gene
GeneCards Summary for SCARNA9L Gene
SCARNA9L (Small Cajal Body-Specific RNA 9 Like) is an RNA Gene, and is affiliated with the lncRNA class.
Rfam classification for SCARNA9L Gene
Additional gene information for SCARNA9L Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA9L Gene
Genomics for SCARNA9L Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SCARNA9L Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH0XJ020135 | Enhancer | 0.3 | Ensembl | 250.7 | +0.5 | 512 | 1 | PRDM6 | ENSG00000201592 ENSG00000201882 SCARNA9L BCLAF3 SH3KBP1 EIF1AX HSALNG0136919 RF00017-8210 MAP7D2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SCARNA9L on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SCARNA9L gene promoter:
-
- ATF6
- CHOP-10
- FOXO1
- FOXO1a
- Max1
- Nkx6-1
- Pax-6
- POU2F1
- POU2F1a
- Spz1
Genomic Locations for SCARNA9L Gene
Latest Assembly
- chrX:20,136,065-20,136,413
- (GRCh38/hg38)
- Size:
- 349 bases
- Orientation:
- Minus strand
Previous Assembly
- chrX:20,154,184-20,154,531
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 348 bases
- Orientation:
- Minus strand
Genomic View for SCARNA9L Gene
Genes around SCARNA9L on UCSC Golden Path with GeneCards custom track
SCARNA9L in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- Xp22.12 by HGNC
- Xp22.12 by Entrez Gene
SCARNA9L Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SCARNA9L Gene
Proteins for SCARNA9L Gene
Post-translational modifications for SCARNA9L Gene
No Post-translational modifications
No data available for DME Specific Peptides for SCARNA9L Gene
Domains & Families for SCARNA9L Gene
Gene Families for SCARNA9L Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCARNA9L Gene
Function for SCARNA9L Gene
Phenotypes From GWAS Catalog for SCARNA9L Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SCARNA9L - Starting at $85 >
- * SCARNA9L CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SCARNA9L - Starting at $45 >
- * SCARNA9L as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA9L Gene
Localization for SCARNA9L Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SCARNA9L Gene
Pathways & Interactions for SCARNA9L Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCARNA9L Gene
Transcripts for SCARNA9L Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SCARNA9L Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075BDDC_9606 | lncRNA | 349 | 4 |
RefSeq: NR_023358, LNCipedia: lnc-RPS6KA3-3:1, NONCODE: NONHSAT136447.2, snoDB: SNODB1315, |
| URS0001BF9DCF_9606 | lncRNA | 348 | 1 |
LncBook: HSALNT0280732, |
SCARNA9L in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SCARNA9L - Starting at $85 >
- * SCARNA9L CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SCARNA9L - Starting at $45 >
- * SCARNA9L as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SCARNA9L Gene
- GeneLoc Exon Structure for
- SCARNA9L
No data available for mRNA/cDNA for SCARNA9L Gene
Expression for SCARNA9L Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCARNA9L
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA9L Gene
Orthologs for SCARNA9L Gene
No data available for Orthologs and Evolution for SCARNA9L Gene
Paralogs for SCARNA9L Gene
No data available for Paralogs for SCARNA9L Gene
Variants for SCARNA9L Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SCARNA9L Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SCARNA9L
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA9L Gene
Disorders for SCARNA9L Gene
Additional Disease Information for SCARNA9L
No disorders were found for SCARNA9L Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA9L Gene
Publications for SCARNA9L Gene
- snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3
ExternalLinks
Products for SCARNA9L Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SCARNA9L
- Origene Custom Protein Services for SCARNA9L
- Browse OriGene Inhibitory RNA Products For SCARNA9L
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SCARNA9L
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SCARNA9L
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SCARNA9L
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SCARNA9L
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SCARNA9L
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SCARNA9L
Sources for SCARNA9L Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB