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Aliases for SCARNA27 Gene

Subcategory (RNA class) for SCARNA27 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SCARNA27 Gene

  • Small Cajal Body-Specific RNA 27 2 3

External Ids for SCARNA27 Gene

Previous GeneCards Identifiers for SCARNA27 Gene

  • GC06U901085

Summaries for SCARNA27 Gene

GeneCards Summary for SCARNA27 Gene

SCARNA27 (Small Cajal Body-Specific RNA 27) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SCARNA27 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA27 Gene

Genomics for SCARNA27 Gene

GeneHancer (GH) Regulatory Elements for SCARNA27 Gene

Promoters and enhancers for SCARNA27 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I008063 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +21.9 21852 2.8 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 BLOC1S5 BLOC1S5-TXNDC5 SCARNA27 EEF1E1-BLOC1S5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA27 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA27 gene promoter:

Genomic Locations for SCARNA27 Gene

Genomic Locations for SCARNA27 Gene
126 bases
Minus strand

Genomic View for SCARNA27 Gene

Genes around SCARNA27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA27 Gene

Proteins for SCARNA27 Gene

Post-translational modifications for SCARNA27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA27 Gene

Domains & Families for SCARNA27 Gene

Gene Families for SCARNA27 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA27 Gene

Function for SCARNA27 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA27 Gene

Localization for SCARNA27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA27 Gene

Pathways & Interactions for SCARNA27 Gene

SuperPathways for SCARNA27 Gene

No Data Available

Interacting Proteins for SCARNA27 Gene

Gene Ontology (GO) - Biological Process for SCARNA27 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA27 Gene

Drugs & Compounds for SCARNA27 Gene

No Compound Related Data Available

Transcripts for SCARNA27 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA27 Gene

No ASD Table

Relevant External Links for SCARNA27 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for SCARNA27 Gene

Expression for SCARNA27 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA27 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA27 Gene

Orthologs for SCARNA27 Gene

No data available for Orthologs and Evolution for SCARNA27 Gene

Paralogs for SCARNA27 Gene

No data available for Paralogs for SCARNA27 Gene

Variants for SCARNA27 Gene

Sequence variations from dbSNP and Humsavar for SCARNA27 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000041649 -- 8,087,392(-) A/G upstream_transcript_variant
rs1001862704 -- 8,087,846(-) T/C upstream_transcript_variant
rs1002914889 -- 8,088,283(-) C/T upstream_transcript_variant
rs1002948031 -- 8,087,966(-) C/T upstream_transcript_variant
rs1003540582 -- 8,086,606(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA27 Gene

Variant ID Type Subtype PubMed ID
esv2731544 CNV deletion 23290073
nsv1133014 OTHER inversion 24896259
nsv1151332 OTHER inversion 26484159
nsv600924 CNV gain 21841781
nsv600927 CNV gain 21841781

Additional Variant Information for SCARNA27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA27 Gene

Disorders for SCARNA27 Gene

Additional Disease Information for SCARNA27

No disorders were found for SCARNA27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA27 Gene

Publications for SCARNA27 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58
  4. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SCARNA27 Gene

Sources for SCARNA27 Gene

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