Aliases for SCARNA21B Gene

Subcategory (RNA class) for SCARNA21B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SCARNA21B Gene

  • Small Cajal Body-Specific RNA 21B 2 3 5
  • SCARNA21B 2
  • RF00602 174

External Ids for SCARNA21B Gene

Previous GeneCards Identifiers for SCARNA21B Gene

  • GC01U905265

Summaries for SCARNA21B Gene

GeneCards Summary for SCARNA21B Gene

SCARNA21B (Small Cajal Body-Specific RNA 21B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SCARNA21B Gene

  • Small Cajal body specific RNA 21

Additional gene information for SCARNA21B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA21B Gene

Genomics for SCARNA21B Gene

GeneHancer (GH) Regulatory Elements for SCARNA21B Gene

Promoters and enhancers for SCARNA21B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCARNA21B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCARNA21B Gene

Genomic Locations for SCARNA21B Gene
chr1:15,542,165-15,542,304
(GRCh38/hg38)
Size:
140 bases
Orientation:
Plus strand
chr1:15,868,660-15,868,799
(GRCh37/hg19)
Size:
140 bases
Orientation:
Plus strand

Genomic View for SCARNA21B Gene

Genes around SCARNA21B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA21B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA21B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA21B Gene

Proteins for SCARNA21B Gene

Post-translational modifications for SCARNA21B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA21B Gene

Domains & Families for SCARNA21B Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCARNA21B Gene

Function for SCARNA21B Gene

Phenotypes From GWAS Catalog for SCARNA21B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA21B Gene

Localization for SCARNA21B Gene

Gene Ontology (GO) - Cellular Components for SCARNA21B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
GO:0015030 Cajal body IEA --
genes like me logo Genes that share ontologies with SCARNA21B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SCARNA21B Gene

Pathways & Interactions for SCARNA21B Gene

PathCards logo

SuperPathways for SCARNA21B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCARNA21B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SCARNA21B: view

No data available for Pathways by source and SIGNOR curated interactions for SCARNA21B Gene

Drugs & Compounds for SCARNA21B Gene

No Compound Related Data Available

Transcripts for SCARNA21B Gene

mRNA/cDNA for SCARNA21B Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA21B Gene

No ASD Table

Relevant External Links for SCARNA21B Gene

GeneLoc Exon Structure for
SCARNA21B
ECgene alternative splicing isoforms for
SCARNA21B

Expression for SCARNA21B Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA21B Gene:

SCARNA21B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA21B Gene

Orthologs for SCARNA21B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCARNA21B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA21 33
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24644 33
  • 81 (a)
OneToMany
Gm23386 33
  • 77 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SCARNA21 33
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA21 33
  • 61 (a)
OneToMany
Species where no ortholog for SCARNA21B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA21B Gene

ENSEMBL:
Gene Tree for SCARNA21B (if available)
TreeFam:
Gene Tree for SCARNA21B (if available)

Paralogs for SCARNA21B Gene

No data available for Paralogs for SCARNA21B Gene

Variants for SCARNA21B Gene

Sequence variations from dbSNP and Humsavar for SCARNA21B Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1002371204 -- 15,542,330(+) A/G downstream_transcript_variant
rs1002961298 -- 15,540,904(+) G/A upstream_transcript_variant
rs1003325971 -- 15,541,301(+) G/A upstream_transcript_variant
rs1003942661 -- 15,540,202(+) T/C/G upstream_transcript_variant
rs1005147440 -- 15,542,276(+) C/T non_coding_transcript_variant

Additional Variant Information for SCARNA21B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA21B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA21B Gene

Disorders for SCARNA21B Gene

Additional Disease Information for SCARNA21B

No disorders were found for SCARNA21B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA21B Gene

Publications for SCARNA21B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 56

No data available for External Links for SCARNA21B Gene

Products for SCARNA21B Gene

Sources for SCARNA21B Gene