Aliases for SCARNA21 Gene

Subcategory (RNA class) for SCARNA21 Gene

snoRNA

Number of RNA Genes sources:

1 / 14

Aliases for SCARNA21 Gene

  • Small Cajal Body-Specific RNA 21 2 3 5
  • SCARNA21A 3
  • SCARNA21 2
  • RF00602 172
  • ACA68 3

External Ids for SCARNA21 Gene

Previous GeneCards Identifiers for SCARNA21 Gene

  • GC17P007750
  • GC17P007811
  • GC17P007812
  • GC17P007815
  • GC17P007819

Summaries for SCARNA21 Gene

GeneCards Summary for SCARNA21 Gene

SCARNA21 (Small Cajal Body-Specific RNA 21) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SCARNA21 Gene

  • Small Cajal body specific RNA 21

Additional gene information for SCARNA21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA21 Gene

Genomics for SCARNA21 Gene

GeneHancer (GH) Regulatory Elements for SCARNA21 Gene

Promoters and enhancers for SCARNA21 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCARNA21 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA21 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • ITF-2
  • Max
  • SRF
  • Tal-1beta

Genomic Locations for SCARNA21 Gene

Genomic Locations for SCARNA21 Gene
chr17:7,906,122-7,906,260
(GRCh38/hg38)
Size:
139 bases
Orientation:
Plus strand
chr17:7,809,440-7,809,578
(GRCh37/hg19)
Size:
139 bases
Orientation:
Plus strand

Genomic View for SCARNA21 Gene

Genes around SCARNA21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA21 Gene

Proteins for SCARNA21 Gene

Post-translational modifications for SCARNA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA21 Gene

Domains & Families for SCARNA21 Gene

Gene Families for SCARNA21 Gene

genes like me logo Genes that share domains with SCARNA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCARNA21 Gene

Function for SCARNA21 Gene

Phenotypes From GWAS Catalog for SCARNA21 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA21 Gene

Localization for SCARNA21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA21 Gene

Pathways & Interactions for SCARNA21 Gene

PathCards logo

SuperPathways for SCARNA21 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SCARNA21 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCARNA21 Gene

Drugs & Compounds for SCARNA21 Gene

No Compound Related Data Available

Transcripts for SCARNA21 Gene

mRNA/cDNA for SCARNA21 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA21 Gene

No ASD Table

Relevant External Links for SCARNA21 Gene

GeneLoc Exon Structure for
SCARNA21

Expression for SCARNA21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCARNA21 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA21 Gene

This gene is overexpressed in Testis (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCARNA21

genes like me logo Genes that share expression patterns with SCARNA21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA21 Gene

Orthologs for SCARNA21 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCARNA21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA21 31
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22442 31
  • 79 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA21 31
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA21 31
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA21 31
  • 59 (a)
OneToMany
Species where no ortholog for SCARNA21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA21 Gene

ENSEMBL:
Gene Tree for SCARNA21 (if available)
TreeFam:
Gene Tree for SCARNA21 (if available)

Paralogs for SCARNA21 Gene

No data available for Paralogs for SCARNA21 Gene

Variants for SCARNA21 Gene

Additional dbSNP identifiers (rs#s) for SCARNA21 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA21 Gene

Variant ID Type Subtype PubMed ID
dgv510n67 CNV gain 20364138
nsv457660 CNV loss 19166990
nsv574333 CNV loss 21841781

Additional Variant Information for SCARNA21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SCARNA21 Gene

Disorders for SCARNA21 Gene

Additional Disease Information for SCARNA21

No disorders were found for SCARNA21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA21 Gene

Publications for SCARNA21 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 2 3 54

Products for SCARNA21 Gene

Sources for SCARNA21 Gene