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Aliases for SCARNA21 Gene

Subcategory (RNA class) for SCARNA21 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA21 Gene

  • Small Cajal Body-Specific RNA 21 2 3 5
  • SCARNA21A 3
  • ACA68 3

External Ids for SCARNA21 Gene

ORGUL Members for SCARNA21 Gene

Previous GeneCards Identifiers for SCARNA21 Gene

  • GC17P007750
  • GC17P007811
  • GC17P007812
  • GC17P007815
  • GC17P007819

Summaries for SCARNA21 Gene

GeneCards Summary for SCARNA21 Gene

SCARNA21 (Small Cajal Body-Specific RNA 21) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA21 Gene

Genomics for SCARNA21 Gene

GeneHancer (GH) Regulatory Elements for SCARNA21 Gene

Promoters and enhancers for SCARNA21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I007931 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.7 +26.4 26370 2.8 HDGF PKNOX1 SMAD1 FOXA2 ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B YY1 CNTROB ENSG00000262730 TRAPPC1 PFAS DVL2 CYB5D1 SCARNA21 CHD3 SENP3 CTC1
GH17I007833 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -66.4 -66393 12.5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 KDM6B DVL2 PFAS CTC1 WRAP53 CNTROB POLR2A SNORD10 SNORA48 PER1
GH17I007474 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.1 -425.5 -425533 12.5 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC POLR2A ZBTB4 SLC35G6 DVL2 PFAS SNORD10 CTC1 WRAP53 SNORA48 CNTROB
GH17I008149 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.1 +251.2 251197 16 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 PER1 VAMP2 ENSG00000265749 CYB5D1 CTC1 DVL2 PFAS CNTROB SENP3 POLR2A
GH17I007010 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.1 -888.4 -888408 13.7 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 MIR497HG RNASEK BCL6B C17orf49 ENSG00000267047 MIR195 MIR497 DVL2 SNORD10 CNTROB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA21 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA21 gene promoter:

Genomic Locations for SCARNA21 Gene

Genomic Locations for SCARNA21 Gene
chr17:7,906,122-7,906,260
(GRCh38/hg38)
Size:
139 bases
Orientation:
Plus strand
chr17:7,809,440-7,809,578
(GRCh37/hg19)

Genomic View for SCARNA21 Gene

Genes around SCARNA21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA21 Gene

Proteins for SCARNA21 Gene

Post-translational modifications for SCARNA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA21 Gene

Domains & Families for SCARNA21 Gene

Gene Families for SCARNA21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA21 Gene

Function for SCARNA21 Gene

Phenotypes From GWAS Catalog for SCARNA21 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA21 Gene

Localization for SCARNA21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA21 Gene

Pathways & Interactions for SCARNA21 Gene

SuperPathways for SCARNA21 Gene

No Data Available

Interacting Proteins for SCARNA21 Gene

Gene Ontology (GO) - Biological Process for SCARNA21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA21 Gene

Drugs & Compounds for SCARNA21 Gene

No Compound Related Data Available

Transcripts for SCARNA21 Gene

mRNA/cDNA for SCARNA21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA21 Gene

No ASD Table

Relevant External Links for SCARNA21 Gene

GeneLoc Exon Structure for
SCARNA21
ECgene alternative splicing isoforms for
SCARNA21

Expression for SCARNA21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA21 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA21 Gene

This gene is overexpressed in Testis (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of SCARNA21 Gene:

SCARNA21
genes like me logo Genes that share expression patterns with SCARNA21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA21 Gene

Orthologs for SCARNA21 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCARNA21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA21 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22442 34
  • 79 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA21 34
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA21 34
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA21 34
  • 59 (a)
OneToMany
Species where no ortholog for SCARNA21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA21 Gene

ENSEMBL:
Gene Tree for SCARNA21 (if available)
TreeFam:
Gene Tree for SCARNA21 (if available)

Paralogs for SCARNA21 Gene

No data available for Paralogs for SCARNA21 Gene

Variants for SCARNA21 Gene

Sequence variations from dbSNP and Humsavar for SCARNA21 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001395482 -- 7,904,329(+) G/T upstream_transcript_variant
rs1006490600 -- 7,905,741(+) A/C/G upstream_transcript_variant
rs1007822684 -- 7,904,847(+) G/A upstream_transcript_variant
rs1011049259 -- 7,906,495(+) C/T downstream_transcript_variant
rs1011486022 -- 7,905,073(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA21 Gene

Variant ID Type Subtype PubMed ID
nsv574333 CNV loss 21841781
nsv457660 CNV loss 19166990
dgv510n67 CNV gain 20364138

Additional Variant Information for SCARNA21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA21 Gene

Disorders for SCARNA21 Gene

Additional Disease Information for SCARNA21

No disorders were found for SCARNA21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA21 Gene

Publications for SCARNA21 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 2 3 58

Products for SCARNA21 Gene

Sources for SCARNA21 Gene

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