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Aliases for SCARNA20 Gene
Subcategory (RNA class) for SCARNA20 Gene
snoRNA
Number of RNA Genes sources:
2 / 17
Aliases for SCARNA20 Gene
External Ids for SCARNA20 Gene
- HGNC: 32578
- Entrez Gene: 677681
- Ensembl: ENSG00000252577
Previous GeneCards Identifiers for SCARNA20 Gene
- GC17P055663
- GC17M055664
- GC17M058308
- GC17M053679
Summaries for SCARNA20 Gene
GeneCards Summary for SCARNA20 Gene
SCARNA20 (Small Cajal Body-Specific RNA 20) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SCARNA20 include Optic Nerve Neoplasm and Optic Nerve Glioma.
Rfam classification for SCARNA20 Gene
-
Small Cajal body specific RNA 20
Additional gene information for SCARNA20 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA20 Gene
Genomics for SCARNA20 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SCARNA20 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SCARNA20 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SCARNA20 gene promoter:
-
- aMEF-2
- E47
- HNF-4alpha1
- MEF-2
- MEF-2A
- Pax-2
- Pax-2a
- Pax-2b
- Tal-1
- ZID
Genomic Locations for SCARNA20 Gene
Genomic Locations for SCARNA20 Gene
- chr17:60,231,516-60,231,646
- (GRCh38/hg38)
- Size:
- 131 bases
- Orientation:
- Minus strand
- chr17:58,308,877-58,309,007
- (GRCh37/hg19)
- Size:
- 131 bases
- Orientation:
- Minus strand
Genomic View for SCARNA20 Gene
Genes around SCARNA20 on UCSC Golden Path with GeneCards custom track
SCARNA20 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q23.2 by HGNC
- 17q23.2 by Entrez Gene
- 17q23.2 by Ensembl
SCARNA20 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SCARNA20 Gene
Proteins for SCARNA20 Gene
Post-translational modifications for SCARNA20 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SCARNA20
- Origene Custom Protein Services for SCARNA20
No data available for DME Specific Peptides for SCARNA20 Gene
Domains & Families for SCARNA20 Gene
Gene Families for SCARNA20 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCARNA20 Gene
Function for SCARNA20 Gene
Phenotypes From GWAS Catalog for SCARNA20 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SCARNA20 - Select products 50% OFF >
- * SCARNA20 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SCARNA20
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SCARNA20 - Select products 50% OFF >
- * SCARNA20 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA20 Gene
Localization for SCARNA20 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
| GO:0015030 | Cajal body | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SCARNA20 Gene
Pathways & Interactions for SCARNA20 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCARNA20 Gene
Transcripts for SCARNA20 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SCARNA20 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000070CFEE_9606 | snoRNA | 131 | 3 |
Ensembl: ENST00000516768 (view in UCSC) , Rfam: RF00601, snoDB: SNODB1748, |
| URS000075C168_9606 | guide_RNA | 130 | 3 |
HGNC: 32578, RefSeq: NR_002999, snoDB: SNODB1321, |
SCARNA20 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SCARNA20 - Select products 50% OFF >
- * SCARNA20 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SCARNA20
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SCARNA20 - Select products 50% OFF >
- * SCARNA20 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for SCARNA20 Gene
- GeneLoc Exon Structure for
- SCARNA20
No data available for mRNA/cDNA for SCARNA20 Gene
Expression for SCARNA20 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCARNA20
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA20 Gene
Orthologs for SCARNA20 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SCARNA20 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SCARNA20 31 |
|
OneToMany | |
| Cow (Bos Taurus) |
Mammalia | SCARNA20 31 31 |
|
ManyToMany | |
| Oppossum (Monodelphis domestica) |
Mammalia | SCARNA20 31 |
|
OneToMany | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SCARNA20 31 |
|
OneToMany | |
| Chicken (Gallus gallus) |
Aves | SCARNA20 31 |
|
OneToMany |
- Species where no ortholog for SCARNA20 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for SCARNA20 Gene
No data available for Paralogs for SCARNA20 Gene
Variants for SCARNA20 Gene
Additional Variant Information for SCARNA20 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SCARNA20
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SCARNA20 Gene
Disorders for SCARNA20 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| optic nerve neoplasm |
|
|
| optic nerve glioma |
|
|
Search SCARNA20 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SCARNA20
No data available for UniProtKB/Swiss-Prot and Genatlas for SCARNA20 Gene
Publications for SCARNA20 Gene
- A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 2 3
ExternalLinks
Products for SCARNA20 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SCARNA20
- Origene Custom Protein Services for SCARNA20
- Browse OriGene Inhibitory RNA Products For SCARNA20
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SCARNA20
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SCARNA20
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SCARNA20
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SCARNA20
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SCARNA20
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SCARNA20
Sources for SCARNA20 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB