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Aliases for SCARNA16 Gene

Subcategory (RNA class) for SCARNA16 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA16 Gene

  • Small Cajal Body-Specific RNA 16 2 3 5
  • ACA47 ScaRNA 3
  • ACA47 3

External Ids for SCARNA16 Gene

Previous GeneCards Identifiers for SCARNA16 Gene

  • GC17P072601
  • GC17P072602
  • GC17P072605
  • GC17P075085
  • GC17P077090
  • GC17P077091
  • GC17P077092
  • GC17P077094

Summaries for SCARNA16 Gene

GeneCards Summary for SCARNA16 Gene

SCARNA16 (Small Cajal Body-Specific RNA 16) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA16 Gene

Genomics for SCARNA16 Gene

GeneHancer (GH) Regulatory Elements for SCARNA16 Gene

Promoters and enhancers for SCARNA16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I077087 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.2 157 3.2 HDGF PKNOX1 CLOCK MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B SCARNA16 SEC14L1 MIR6516 GC17P077098 GC17P077097 GC17P077093 SRSF2 METTL23 MFSD11 SEPT9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA16 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA16 gene promoter:

Genomic Locations for SCARNA16 Gene

Genomic Locations for SCARNA16 Gene
chr17:77,089,307-77,089,493
(GRCh38/hg38)
Size:
187 bases
Orientation:
Plus strand
chr17:75,082,798-75,091,068
(GRCh37/hg19)

Genomic View for SCARNA16 Gene

Genes around SCARNA16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA16 Gene

Proteins for SCARNA16 Gene

Post-translational modifications for SCARNA16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA16 Gene

Domains & Families for SCARNA16 Gene

Gene Families for SCARNA16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA16 Gene

Function for SCARNA16 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA16 Gene

Localization for SCARNA16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA16 Gene

Pathways & Interactions for SCARNA16 Gene

SuperPathways for SCARNA16 Gene

No Data Available

Interacting Proteins for SCARNA16 Gene

Gene Ontology (GO) - Biological Process for SCARNA16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA16 Gene

Drugs & Compounds for SCARNA16 Gene

No Compound Related Data Available

Transcripts for SCARNA16 Gene

mRNA/cDNA for SCARNA16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA16 Gene

No ASD Table

Relevant External Links for SCARNA16 Gene

GeneLoc Exon Structure for
SCARNA16
ECgene alternative splicing isoforms for
SCARNA16

Expression for SCARNA16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA16 Gene:

SCARNA16
genes like me logo Genes that share expression patterns with SCARNA16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA16 Gene

Orthologs for SCARNA16 Gene

Evolution for SCARNA16 Gene

ENSEMBL:
Gene Tree for SCARNA16 (if available)
TreeFam:
Gene Tree for SCARNA16 (if available)

No data available for Orthologs for SCARNA16 Gene

Paralogs for SCARNA16 Gene

No data available for Paralogs for SCARNA16 Gene

Variants for SCARNA16 Gene

Sequence variations from dbSNP and Humsavar for SCARNA16 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001907131 -- 77,087,470(+) G/C upstream_transcript_variant
rs1002738301 -- 77,087,618(+) C/T upstream_transcript_variant
rs1003774758 -- 77,088,823(+) G/C/T upstream_transcript_variant
rs1004148442 -- 77,088,972(+) C/T upstream_transcript_variant
rs1005880365 -- 77,087,639(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA16 Gene

Variant ID Type Subtype PubMed ID
esv3641304 CNV gain 21293372
esv3582914 CNV loss 25503493
dgv5784n54 CNV gain 21841781

Additional Variant Information for SCARNA16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA16 Gene

Disorders for SCARNA16 Gene

Additional Disease Information for SCARNA16

No disorders were found for SCARNA16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA16 Gene

Publications for SCARNA16 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3 58

Products for SCARNA16 Gene

Sources for SCARNA16 Gene

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