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Aliases for SCARNA13 Gene
Subcategory (RNA class) for SCARNA13 Gene
snoRNA
Aliases for SCARNA13 Gene
External Ids for SCARNA13 Gene
- HGNC: 32570
- NCBI Entrez Gene: 677768
- Ensembl: ENSG00000252481
Previous GeneCards Identifiers for SCARNA13 Gene
- GC14U900662
- GC14M095071
- GC14M095999
- GC14M076185
Summaries for SCARNA13 Gene
GeneCards Summary for SCARNA13 Gene
SCARNA13 (Small Cajal Body-Specific RNA 13) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SCARNA13 include Koolen-De Vries Syndrome.
Rfam classification for SCARNA13 Gene
-
Small Cajal body specific RNA 13
Additional gene information for SCARNA13 Gene
- HGNC (32570)
- NCBI Entrez Gene (677768)
- Ensembl (ENSG00000252481)
- Open Targets Platform(ENSG00000252481)
- Search for SCARNA13 at DataMed
- Search for SCARNA13 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA13 Gene
Genomics for SCARNA13 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SCARNA13 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SCARNA13 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SCARNA13 gene promoter:
-
- E47
- GR
- GR-alpha
- GR-beta
- NF-kappaB1
- Nkx2-5
- Nkx5-1
- Pax-5
- POU2F1
- POU2F1a
Genomic Locations for SCARNA13 Gene
Latest Assembly
- chr14:95,533,354-95,533,629
- (GRCh38/hg38)
- Size:
- 276 bases
- Orientation:
- Minus strand
Previous Assembly
- chr14:95,999,692-95,999,966
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 275 bases
- Orientation:
- Minus strand
- chr14:95,999,692-95,999,966
- (GRCh37/hg19 by Ensembl)
- Size:
- 275 bases
- Orientation:
- Minus strand
Genomic View for SCARNA13 Gene
Genes around SCARNA13 on UCSC Golden Path with GeneCards custom track
SCARNA13 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 14q32.12 by HGNC
- 14q32.13 by Entrez Gene
- 14q32.13 by Ensembl
SCARNA13 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SCARNA13 Gene
Proteins for SCARNA13 Gene
Post-translational modifications for SCARNA13 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SCARNA13 Gene
Domains & Families for SCARNA13 Gene
Gene Families for SCARNA13 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCARNA13 Gene
Function for SCARNA13 Gene
Phenotypes From GWAS Catalog for SCARNA13 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SCARNA13 - Starting at $85 >
- * SCARNA13 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SCARNA13 - Starting at $45 >
- * SCARNA13 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA13 Gene
Localization for SCARNA13 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
| GO:0015030 | Cajal body | IMP | 25467444 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SCARNA13 Gene
Pathways & Interactions for SCARNA13 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCARNA13 Gene
Transcripts for SCARNA13 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SCARNA13 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000026BDF0_9606 | snoRNA | 275 | 8 |
RefSeq: NR_003002, Ensembl: ENST00000516672 (view in UCSC) , LncBook: HSALNT0215211, HSALNT0215212, LNCipedia: SNHG10:11, Rfam: RF00231, snoDB: SNODB82, snOPY: Homo_sapiens300781, ENA: AF492209.1:1..275:ncRNA, |
| URS00008B8360_9606 | lncRNA | 1330 | 3 |
LncBook: HSALNT0215205, LNCipedia: SNHG10:4, NONCODE: NONHSAT039454.2, |
| URS00008C03DF_9606 | lncRNA | 1074 | 3 |
LncBook: HSALNT0215202, LNCipedia: SNHG10:9, NONCODE: NONHSAT039453.2, |
| URS00008BBB69_9606 | lncRNA | 3200 | 2 |
LNCipedia: SNHG10:1, NONCODE: NONHSAT039451.2, |
| URS00008B2331_9606 | lncRNA | 1961 | 2 |
LNCipedia: SNHG10:5, NONCODE: NONHSAT039455.2, |
SCARNA13 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SCARNA13 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SCARNA13 - Starting at $85 >
- * SCARNA13 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SCARNA13 - Starting at $45 >
- * SCARNA13 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SCARNA13 Gene
- GeneLoc Exon Structure for
- SCARNA13
Expression for SCARNA13 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCARNA13
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA13 Gene
Orthologs for SCARNA13 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SCARNA13 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Scarna13 31 |
|
OneToMany | |
| Gm25624 31 |
|
OneToMany | |||
| Gm26489 31 |
|
OneToMany | |||
| Cow (Bos Taurus) |
Mammalia | SCARNA13 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SCARNA13 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | SCARNA13 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SCARNA13 31 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | SCARNA13 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | SCARNA13 31 |
|
OneToOne | |
| Zebrafish (Danio rerio) |
Actinopterygii | SCARNA13 31 |
|
OneToOne |
- Species where no ortholog for SCARNA13 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SCARNA13 Gene
No data available for Paralogs for SCARNA13 Gene
Variants for SCARNA13 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv89e55 | CNV | gain | 17911159 |
| esv3635400 | CNV | gain | 21293372 |
| nsv1042858 | CNV | gain | 25217958 |
| nsv565631 | CNV | gain | 21841781 |
Additional Variant Information for SCARNA13 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SCARNA13
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SCARNA13 Gene
Disorders for SCARNA13 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| koolen-de vries syndrome |
|
|
Search SCARNA13 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SCARNA13
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for SCARNA13 Gene
Publications for SCARNA13 Gene
- A Cajal body-specific pseudouridylation guide RNA is composed of two box H/ACA snoRNA-like domains. (PMID: 12409454) Kiss AM … Kiss T (Nucleic acids research 2002) 2 3
- SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
- Proteostatic control of telomerase function through TRiC-mediated folding of TCAB1. (PMID: 25467444) Freund A … Artandi SE (Cell 2014) 3
- hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase. (PMID: 16601202) Hoareau-Aveilla C … Henry Y (RNA (New York, N.Y.) 2006) 3
ExternalLinks
Products for SCARNA13 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SCARNA13
- Origene Custom Protein Services for SCARNA13
- Browse OriGene Inhibitory RNA Products For SCARNA13
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SCARNA13
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SCARNA13
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SCARNA13
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SCARNA13
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SCARNA13
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SCARNA13
Sources for SCARNA13 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB