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Aliases for SCARNA11 Gene

Subcategory (RNA class) for SCARNA11 Gene


Quality Score for this RNA gene is


Aliases for SCARNA11 Gene

  • Small Cajal Body-Specific RNA 11 2 3 5
  • ACA57 ScaRNA 3
  • ACA57 3

External Ids for SCARNA11 Gene

Previous GeneCards Identifiers for SCARNA11 Gene

  • GC12M006561
  • GC12M006690
  • GC12M006544

Summaries for SCARNA11 Gene

GeneCards Summary for SCARNA11 Gene

SCARNA11 (Small Cajal Body-Specific RNA 11) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA11 Gene

Genomics for SCARNA11 Gene

GeneHancer (GH) Regulatory Elements for SCARNA11 Gene

Promoters and enhancers for SCARNA11 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I006602 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 -24.1 -24119 7.4 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CHD4 ZNF384 ENSG00000219410 ENSG00000247853 NOP2 NCAPD2 ING4 SPSB2 EMG1 SCARNA12
GH12I006546 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12 +29.7 29694 10.3 HDGF PKNOX1 ARID4B SIN3A YY1 ZNF143 ZNF548 FOS SP3 SP5 IFFO1 CHD4 ENSG00000247853 ENSG00000219410 TAPBPL ATN1 VAMP1 ZNF384 SCARNA11 SCARNA10
GH12I006344 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +235.0 235000 3.6 PKNOX1 SMAD1 ATF1 ARNT SIN3A BRCA1 NCOA2 TCF12 GATA2 ATF7 GC12P006346 CHD4 ENSG00000219410 ZNF384 ENSG00000247853 PHB2 LTBR SCNN1A VAMP1 C1RL-AS1
GH12I006416 Enhancer 0.8 FANTOM5 Ensembl 10.3 +164.7 164664 1.1 POLR2A IKZF1 REST BATF MYC RUNX3 SPI1 CHD4 VAMP1 SCNN1A LTBR CD27 TAPBPL CD27-AS1 ENSG00000255966 GAPDH NCAPD2
GH12I006351 Enhancer 0.7 Ensembl dbSUPER 10.6 +229.2 229208 1.6 CEBPB CEBPG ZIC2 NR2F2 LTBR SCNN1A VAMP1 ENSG00000247853 SCARNA11 CHD4 CD27-AS1 TAPBPL IFFO1 NOP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA11 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA11 gene promoter:

Genomic Locations for SCARNA11 Gene

Genomic Locations for SCARNA11 Gene
137 bases
Minus strand

Genomic View for SCARNA11 Gene

Genes around SCARNA11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA11 Gene

Proteins for SCARNA11 Gene

Post-translational modifications for SCARNA11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA11 Gene

Domains & Families for SCARNA11 Gene

Gene Families for SCARNA11 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA11 Gene

Function for SCARNA11 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA11 Gene

Localization for SCARNA11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA11 Gene

Pathways & Interactions for SCARNA11 Gene

SuperPathways for SCARNA11 Gene

No Data Available

Interacting Proteins for SCARNA11 Gene

Gene Ontology (GO) - Biological Process for SCARNA11 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA11 Gene

Drugs & Compounds for SCARNA11 Gene

No Compound Related Data Available

Transcripts for SCARNA11 Gene

mRNA/cDNA for SCARNA11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA11 Gene

No ASD Table

Relevant External Links for SCARNA11 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA11 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA11 Gene:


SOURCE GeneReport for Unigene cluster for SCARNA11 Gene:

genes like me logo Genes that share expression patterns with SCARNA11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA11 Gene

Orthologs for SCARNA11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA11 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCARNA11 34
  • 100 (a)
(Bos Taurus)
Mammalia SCARNA11 34
  • 89 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA11 34
  • 69 (a)
(Gallus gallus)
Aves SCARNA11 34
  • 59 (a)
(Anolis carolinensis)
Reptilia SCARNA11 34
  • 56 (a)
(Danio rerio)
Actinopterygii SCARNA11 34
  • 63 (a)
Species where no ortholog for SCARNA11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA11 Gene

Gene Tree for SCARNA11 (if available)
Gene Tree for SCARNA11 (if available)

Paralogs for SCARNA11 Gene

No data available for Paralogs for SCARNA11 Gene

Variants for SCARNA11 Gene

Sequence variations from dbSNP and Humsavar for SCARNA11 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs201992075 pathogenic, Sifrim-Hitz-Weiss syndrome 6,581,131(-) C/T downstream_transcript_variant
rs774243580 likely-pathogenic, not provided 6,581,051(-) C/A downstream_transcript_variant
rs1000552859 -- 6,582,786(-) C/T upstream_transcript_variant
rs1002238404 -- 6,581,965(-) G/A upstream_transcript_variant
rs1005704585 -- 6,580,973(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA11 Gene

Variant ID Type Subtype PubMed ID
nsv509452 CNV insertion 20534489
nsv826210 CNV gain 20364138
nsv826211 CNV gain 20364138
nsv832322 CNV loss 17160897
nsv973982 CNV duplication 23825009

Additional Variant Information for SCARNA11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA11 Gene

Disorders for SCARNA11 Gene

Additional Disease Information for SCARNA11

No disorders were found for SCARNA11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA11 Gene

Publications for SCARNA11 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3 58

Products for SCARNA11 Gene

Sources for SCARNA11 Gene

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