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Aliases for SCARNA10 Gene

Subcategory (RNA class) for SCARNA10 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA10 Gene

  • Small Cajal Body-Specific RNA 10 2 3 5
  • U85 3

External Ids for SCARNA10 Gene

ORGUL Members for SCARNA10 Gene

Previous GeneCards Identifiers for SCARNA10 Gene

  • GC12U900562
  • GC12P006620
  • GC12P006474
  • GC12P006622

Summaries for SCARNA10 Gene

GeneCards Summary for SCARNA10 Gene

SCARNA10 (Small Cajal Body-Specific RNA 10) is an RNA Gene, and is affiliated with the scaRNA class. Diseases associated with SCARNA10 include Pulmonary Aspergilloma.

Additional gene information for SCARNA10 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA10 Gene

Genomics for SCARNA10 Gene

GeneHancer (GH) Regulatory Elements for SCARNA10 Gene

Promoters and enhancers for SCARNA10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I006546 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.5 +41.7 41693 10.3 HDGF PKNOX1 ARID4B SIN3A YY1 ZNF143 ZNF548 FOS SP3 SP5 IFFO1 CHD4 ENSG00000247853 ENSG00000219410 TAPBPL ATN1 VAMP1 ZNF384 SCARNA11 SCARNA10
GH12I006530 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.5 +26.9 26874 12.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 GAPDH ENSG00000269968 ZNF384 ENSG00000219410 CHD4 ENSG00000247853 NCAPD2 NOP2 SPSB2 ENSG00000256967
GH12I006468 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.5 -40.0 -39977 3.1 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 VAMP1 TAPBPL ZNF384 NCAPD2 ENSG00000219410 ENSG00000247853 NOP2 ING4 CHD4 MRPL51
GH12I006442 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.1 -64.7 -64726 6 HDGF PKNOX1 SMAD1 YBX1 GLI4 BATF KLF5 ATF7 ETV6 BCLAF1 CD27 CD27-AS1 TAPBPL ENSG00000255966 GAPDH VAMP1 TNFRSF1A NCAPD2 SCARNA10 IFFO1
GH12I006391 Enhancer 1 Ensembl ENCODE dbSUPER 11 -117.8 -117787 2.1 ZNF335 ZNF121 AFF1 CTBP1 ZBTB33 ZBTB40 ATF2 SPI1 LOC105369628 GC12P006396 LTBR TNFRSF1A CD27 NCAPD2 SCARNA10 VAMP1 ENSG00000255966 GAPDH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA10 gene promoter:

Genomic Locations for SCARNA10 Gene

Genomic Locations for SCARNA10 Gene
chr12:6,510,222-6,510,551
(GRCh38/hg38)
Size:
330 bases
Orientation:
Plus strand
chr12:6,619,388-6,619,717
(GRCh37/hg19)

Genomic View for SCARNA10 Gene

Genes around SCARNA10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA10 Gene

Proteins for SCARNA10 Gene

Post-translational modifications for SCARNA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA10 Gene

Domains & Families for SCARNA10 Gene

Gene Families for SCARNA10 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA10 Gene

Function for SCARNA10 Gene

Phenotypes From GWAS Catalog for SCARNA10 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA10 Gene

Localization for SCARNA10 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCARNA10 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA10 Gene

Pathways & Interactions for SCARNA10 Gene

SuperPathways for SCARNA10 Gene

No Data Available

Interacting Proteins for SCARNA10 Gene

Gene Ontology (GO) - Biological Process for SCARNA10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA10 Gene

Drugs & Compounds for SCARNA10 Gene

No Compound Related Data Available

Transcripts for SCARNA10 Gene

mRNA/cDNA for SCARNA10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA10 Gene

No ASD Table

Relevant External Links for SCARNA10 Gene

GeneLoc Exon Structure for
SCARNA10
ECgene alternative splicing isoforms for
SCARNA10

Expression for SCARNA10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA10 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA10 Gene

This gene is overexpressed in Whole Blood (x7.0).

NURSA nuclear receptor signaling pathways regulating expression of SCARNA10 Gene:

SCARNA10
genes like me logo Genes that share expression patterns with SCARNA10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA10 Gene

Orthologs for SCARNA10 Gene

Evolution for SCARNA10 Gene

ENSEMBL:
Gene Tree for SCARNA10 (if available)
TreeFam:
Gene Tree for SCARNA10 (if available)

No data available for Orthologs for SCARNA10 Gene

Paralogs for SCARNA10 Gene

No data available for Paralogs for SCARNA10 Gene

Variants for SCARNA10 Gene

Sequence variations from dbSNP and Humsavar for SCARNA10 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000011590 -- 6,508,619(+) T/C upstream_transcript_variant
rs1001681729 -- 6,510,403(+) T/C non_coding_transcript_variant
rs1001968398 -- 6,509,089(+) T/A upstream_transcript_variant
rs1002911475 -- 6,510,256(+) T/C non_coding_transcript_variant
rs1003809718 -- 6,508,260(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA10 Gene

Variant ID Type Subtype PubMed ID
esv2759876 CNV gain 17122850
esv34325 CNV gain 17911159
esv34390 CNV gain 17911159
nsv8895 CNV gain 18304495

Additional Variant Information for SCARNA10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA10 Gene

Disorders for SCARNA10 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCARNA10 Gene - From: DISEASES

Disorder Aliases PubMed IDs
pulmonary aspergilloma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SCARNA10

genes like me logo Genes that share disorders with SCARNA10: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCARNA10 Gene

Publications for SCARNA10 Gene

  1. A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. (PMID: 11157760) Jády BE … Kiss T (The EMBO journal 2001) 2 3 58
  2. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 3 58
  3. Proteostatic control of telomerase function through TRiC-mediated folding of TCAB1. (PMID: 25467444) Freund A … Artandi SE (Cell 2014) 3

Products for SCARNA10 Gene

Sources for SCARNA10 Gene

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