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Aliases for SCAND2P Gene

Aliases for SCAND2P Gene

  • SCAN Domain Containing 2 Pseudogene 2 3 5
  • SCAN Domain-Containing 2 2 3
  • SCAND2 3 4
  • SCAN Domain-Containing Protein 2 Pseudogene 4
  • Egl Nine Homolog 1 Pseudogene 3
  • SCAN Domain Containing 2 2

External Ids for SCAND2P Gene

Previous HGNC Symbols for SCAND2P Gene

  • SCAND2

Previous GeneCards Identifiers for SCAND2P Gene

  • GC15P085178
  • GC15P085179

Summaries for SCAND2P Gene

GeneCards Summary for SCAND2P Gene

SCAND2P (SCAN Domain Containing 2 Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity.

Additional gene information for SCAND2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAND2P Gene

Genomics for SCAND2P Gene

GeneHancer (GH) Regulatory Elements for SCAND2P Gene

Promoters and enhancers for SCAND2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I084630 Promoter/Enhancer 1.6 Ensembl ENCODE 581 +1.2 1168 4.4 HDGF PKNOX1 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 POLR2B ZNF766 SCAND2P EGLN1P1 ENSG00000275120 GC15M084630 NMB WDR73 GOLGA6L4 LINC00933 ZNF592 RN7SL331P
GH15I084714 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 84 +84.5 84510 3.4 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 ZNF548 SP3 SEC11A SCAND2P WDR73 NMB GOLGA6L5P ZNF592 LINC00933 UBE2Q2P1 GOLGA6L4 CSPG4P12
GH15I084569 Promoter/Enhancer 1.6 Ensembl ENCODE 36.8 -60.6 -60589 2.5 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 LINC00933 UBE2Q2P1 WDR73 SCAND2P GOLGA6L4 ZSCAN2 GOLGA6L3 GOLGA6L5P ENSG00000256278 NMB
GH15I084746 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 17 +117.4 117409 5.2 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 YY1 POLR2B ZNF592 GC15M084747 NMB GOLGA6L4 WDR73 GOLGA6L5P SCAND2P GOLGA6L3 UBE2Q2P1 ENSG00000259683
GH15I084652 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 17.3 +23.0 22968 3 HDGF PKNOX1 MLX ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 SLC30A9 WDR73 NMB SCAND2P RN7SL331P ENSG00000259683
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCAND2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCAND2P Gene

Genomic Locations for SCAND2P Gene
chr15:84,631,451-84,647,478
(GRCh38/hg38)
Size:
16,028 bases
Orientation:
Plus strand
chr15:85,174,682-85,185,695
(GRCh37/hg19)

Genomic View for SCAND2P Gene

Genes around SCAND2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAND2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAND2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAND2P Gene

Proteins for SCAND2P Gene

  • Protein details for SCAND2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZW5-SCND2_HUMAN
    Recommended name:
    Putative SCAN domain-containing protein SCAND2P
    Protein Accession:
    Q9GZW5
    Secondary Accessions:
    • A8K374
    • Q9H9G1

    Protein attributes for SCAND2P Gene

    Size:
    306 amino acids
    Molecular mass:
    34217 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SCAND2P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCAND2P Gene

Post-translational modifications for SCAND2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAND2P Gene

Domains & Families for SCAND2P Gene

Protein Domains for SCAND2P Gene

Suggested Antigen Peptide Sequences for SCAND2P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCAND2P: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SCAND2P Gene

Function for SCAND2P Gene

Phenotypes From GWAS Catalog for SCAND2P Gene

Gene Ontology (GO) - Molecular Function for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003700 DNA binding transcription factor activity IEA --
genes like me logo Genes that share ontologies with SCAND2P: view
genes like me logo Genes that share phenotypes with SCAND2P: view

Animal Model Products

miRNA for SCAND2P Gene

miRTarBase miRNAs that target SCAND2P

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCAND2P Gene

Localization for SCAND2P Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAND2P Gene

Gene Ontology (GO) - Cellular Components for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with SCAND2P: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SCAND2P Gene

Pathways & Interactions for SCAND2P Gene

SuperPathways for SCAND2P Gene

No Data Available

Interacting Proteins for SCAND2P Gene

Gene Ontology (GO) - Biological Process for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with SCAND2P: view

No data available for Pathways by source and SIGNOR curated interactions for SCAND2P Gene

Drugs & Compounds for SCAND2P Gene

No Compound Related Data Available

Transcripts for SCAND2P Gene

Unigene Clusters for SCAND2P Gene

SCAN domain containing 2 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAND2P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b
SP1: - - -
SP2: -
SP3: - -
SP4:

Relevant External Links for SCAND2P Gene

GeneLoc Exon Structure for
SCAND2P
ECgene alternative splicing isoforms for
SCAND2P

Expression for SCAND2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCAND2P Gene

NURSA nuclear receptor signaling pathways regulating expression of SCAND2P Gene:

SCAND2P

SOURCE GeneReport for Unigene cluster for SCAND2P Gene:

Hs.658114
genes like me logo Genes that share expression patterns with SCAND2P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAND2P Gene

Orthologs for SCAND2P Gene

Evolution for SCAND2P Gene

ENSEMBL:
Gene Tree for SCAND2P (if available)
TreeFam:
Gene Tree for SCAND2P (if available)

No data available for Orthologs for SCAND2P Gene

Paralogs for SCAND2P Gene

(10) SIMAP similar genes for SCAND2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SCAND2P: view

No data available for Paralogs for SCAND2P Gene

Variants for SCAND2P Gene

Sequence variations from dbSNP and Humsavar for SCAND2P Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000204964 -- 84,631,592(+) C/G non_coding_transcript_variant
rs1000212598 -- 84,631,774(+) C/T non_coding_transcript_variant
rs1000306718 -- 84,638,145(+) G/A intron_variant
rs1000432535 -- 84,634,023(+) G/C intron_variant, non_coding_transcript_variant
rs1000562161 -- 84,633,211(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SCAND2P Gene

Variant ID Type Subtype PubMed ID
esv2657745 CNV deletion 23128226
esv2672879 CNV deletion 23128226
esv3569831 CNV gain 25503493
esv3637095 CNV gain 21293372
esv3637096 CNV gain 21293372
nsv428310 CNV gain+loss 18775914

Additional Variant Information for SCAND2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAND2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCAND2P Gene

Disorders for SCAND2P Gene

Additional Disease Information for SCAND2P

No disorders were found for SCAND2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAND2P Gene

Publications for SCAND2P Gene

  1. Mapping, characterization, and expression analysis of the SM-20 human homologue, c1orf12, and identification of a novel related gene, SCAND2. (PMID: 11056053) Dupuy D … Arveiler B (Genomics 2000) 2 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. SCAN domain-containing 2 gene (SCAND2) is a novel nuclear protein derived from the zinc finger family by exon shuffling. (PMID: 12036577) Dupuy D … Arveiler B (Gene 2002) 2 3 58
  5. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58

Products for SCAND2P Gene

Sources for SCAND2P Gene

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