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Aliases for SCAND1 Gene

Aliases for SCAND1 Gene

  • SCAN Domain Containing 1 2 3 5
  • SDP1 3 4
  • SCAN Domain-Containing Protein 1 3
  • SCAN-Related Protein RAZ1 3
  • SCAN Domain-Containing 1 2
  • RAZ1 3

External Ids for SCAND1 Gene

Previous GeneCards Identifiers for SCAND1 Gene

  • GC20M034231
  • GC20M035209
  • GC20M035256
  • GC20M034004
  • GC20M034542
  • GC20M031319

Summaries for SCAND1 Gene

Entrez Gene Summary for SCAND1 Gene

  • This gene encodes a SCAN box domain-containing protein. The SCAN domain is a highly conserved, leucine-rich motif of approximately 60 aa originally found within a subfamily of zinc finger proteins. This gene belongs to a family of genes that encode an isolated SCAN domain, but no zinc finger motif. This protein binds to and may regulate the function of the transcription factor myeloid zinc finger 1B. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Jan 2011]

GeneCards Summary for SCAND1 Gene

SCAND1 (SCAN Domain Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity and transcription coactivator activity. An important paralog of this gene is ZNF500.

UniProtKB/Swiss-Prot for SCAND1 Gene

  • May regulate transcriptional activity.

Gene Wiki entry for SCAND1 Gene

Additional gene information for SCAND1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAND1 Gene

Genomics for SCAND1 Gene

GeneHancer (GH) Regulatory Elements for SCAND1 Gene

Promoters and enhancers for SCAND1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I035951 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.4 +5.6 5612 3.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 CNBD2 SCAND1 CPNE1 RBM12 RBM39 RPL36P4 SOGA1 TRPC4AP ERGIC3 DSN1
GH20I035738 Promoter/Enhancer 3.3 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.2 +217.7 217749 7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 RBM39 CPNE1 RBM12 ERGIC3 AAR2 TRPC4AP RPL36P4 PHF20 EIF6 EDEM2
GH20I035764 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 +189.9 189927 9.2 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF416 ZNF548 SP3 PHF20 ENSG00000283527 CPNE1 RBM12 RBM39 ERGIC3 NCOA6 TRPC4AP AAR2 DLGAP4-AS1
GH20I036048 Promoter/Enhancer 1.6 Ensembl ENCODE 4.5 -90.9 -90937 4 ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC MEF2D SSRP1 GC20M036049 GC20P036049 NORAD CPNE1 RBM39 RBM12 DSN1 TRPC4AP AAR2 RPL36P4
GH20I035795 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 2.9 +162.7 162671 3.5 HLF ZNF507 CPNE1 PHF20 SPAG4 RBM39 SCAND1 GC20M035824
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCAND1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCAND1 gene promoter:

Genomic Locations for SCAND1 Gene

Genomic Locations for SCAND1 Gene
chr20:35,953,617-35,959,472
(GRCh38/hg38)
Size:
5,856 bases
Orientation:
Minus strand
chr20:34,541,539-34,547,394
(GRCh37/hg19)

Genomic View for SCAND1 Gene

Genes around SCAND1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAND1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAND1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAND1 Gene

Proteins for SCAND1 Gene

  • Protein details for SCAND1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P57086-SCND1_HUMAN
    Recommended name:
    SCAN domain-containing protein 1
    Protein Accession:
    P57086
    Secondary Accessions:
    • Q6IAG7

    Protein attributes for SCAND1 Gene

    Size:
    179 amino acids
    Molecular mass:
    19082 Da
    Quaternary structure:
    • Interacts with ZNF202.

neXtProt entry for SCAND1 Gene

Post-translational modifications for SCAND1 Gene

Other Protein References for SCAND1 Gene

No data available for DME Specific Peptides for SCAND1 Gene

Domains & Families for SCAND1 Gene

Gene Families for SCAND1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for SCAND1 Gene

Suggested Antigen Peptide Sequences for SCAND1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCAND1: view

No data available for UniProtKB/Swiss-Prot for SCAND1 Gene

Function for SCAND1 Gene

Molecular function for SCAND1 Gene

UniProtKB/Swiss-Prot Function:
May regulate transcriptional activity.

Phenotypes From GWAS Catalog for SCAND1 Gene

Gene Ontology (GO) - Molecular Function for SCAND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003700 DNA binding transcription factor activity ISS --
GO:0003713 transcription coactivator activity IEA --
GO:0005515 protein binding IPI 16189514
GO:0042802 identical protein binding ISS --
genes like me logo Genes that share ontologies with SCAND1: view

Phenotypes for SCAND1 Gene

genes like me logo Genes that share phenotypes with SCAND1: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAND1 Gene

Localization for SCAND1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAND1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCAND1 gene
Compartment Confidence
nucleus 5
cytosol 2
cytoskeleton 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Actin filaments (3)
  • Cytosol (3)
  • Nucleus (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SCAND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
genes like me logo Genes that share ontologies with SCAND1: view

Pathways & Interactions for SCAND1 Gene

SuperPathways for SCAND1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCAND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with SCAND1: view

No data available for Pathways by source and SIGNOR curated interactions for SCAND1 Gene

Drugs & Compounds for SCAND1 Gene

No Compound Related Data Available

Transcripts for SCAND1 Gene

Unigene Clusters for SCAND1 Gene

SCAN domain containing 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAND1 Gene

No ASD Table

Relevant External Links for SCAND1 Gene

GeneLoc Exon Structure for
SCAND1
ECgene alternative splicing isoforms for
SCAND1

Expression for SCAND1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCAND1 Gene

Protein differential expression in normal tissues from HIPED for SCAND1 Gene

This gene is overexpressed in Monocytes (56.8) and CD4 Tcells (12.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SCAND1 Gene



Protein tissue co-expression partners for SCAND1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCAND1 Gene:

SCAND1

SOURCE GeneReport for Unigene cluster for SCAND1 Gene:

Hs.584909

Evidence on tissue expression from TISSUES for SCAND1 Gene

  • Nervous system(4.7)
  • Skin(4.4)
genes like me logo Genes that share expression patterns with SCAND1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAND1 Gene

Orthologs for SCAND1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCAND1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCAND1 33 34
  • 99.63 (n)
dog
(Canis familiaris)
Mammalia SCAND1 33 34
  • 81.27 (n)
mouse
(Mus musculus)
Mammalia Scand1 33 16 34
  • 80.41 (n)
rat
(Rattus norvegicus)
Mammalia Scand1 33
  • 79.58 (n)
cow
(Bos Taurus)
Mammalia SCAND1 33 34
  • 77.34 (n)
oppossum
(Monodelphis domestica)
Mammalia SCAND1 34
  • 49 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 32 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 26 (a)
ManyToMany
-- 34
  • 9 (a)
ManyToMany
-- 34
  • 8 (a)
ManyToMany
-- 34
  • 6 (a)
ManyToMany
-- 34
  • 6 (a)
ManyToMany
-- 34
  • 6 (a)
ManyToMany
Species where no ortholog for SCAND1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCAND1 Gene

ENSEMBL:
Gene Tree for SCAND1 (if available)
TreeFam:
Gene Tree for SCAND1 (if available)

Paralogs for SCAND1 Gene

Variants for SCAND1 Gene

Sequence variations from dbSNP and Humsavar for SCAND1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000417733 -- 35,954,855(-) C/T 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1000532386 -- 35,955,180(-) C/G/T 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1000623838 -- 35,955,404(-) A/T upstream_transcript_variant
rs1001681897 -- 35,954,673(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001734465 -- 35,954,860(-) G/C/T 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCAND1 Gene

Variant ID Type Subtype PubMed ID
nsv833964 CNV loss 17160897
nsv526188 CNV gain 19592680
nsv522947 CNV gain 19592680
nsv1067230 CNV gain 25217958
nsv1066673 CNV loss 25217958

Variation tolerance for SCAND1 Gene

Gene Damage Index Score: 0.13; 2.85% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SCAND1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAND1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCAND1 Gene

Disorders for SCAND1 Gene

Additional Disease Information for SCAND1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SCAND1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAND1 Gene

Publications for SCAND1 Gene

  1. Identification of a novel SCAN box-related protein that interacts with MZF1B. The leucine-rich SCAN box mediates hetero- and homoprotein associations. (PMID: 10777584) Sander TL … Morris JF (The Journal of biological chemistry 2000) 2 3 22 58
  2. The SCAN domain mediates selective oligomerization. (PMID: 10747874) Schumacher C … Wagner S (The Journal of biological chemistry 2000) 2 3 4 58
  3. Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations. (PMID: 18660489) Lu Y … Boer JM (Journal of lipid research 2008) 3 44 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. SDP1 is a peroxisome-proliferator-activated receptor gamma 2 co-activator that binds through its SCAN domain. (PMID: 12444922) Babb R … Bowen BR (The Biochemical journal 2003) 2 3 58

Products for SCAND1 Gene

Sources for SCAND1 Gene

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