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Aliases for SCAMP1-AS1 Gene

Subcategory (RNA class) for SCAMP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCAMP1-AS1 Gene

  • SCAMP1 Antisense RNA 1 2 3 5
  • CTD-2037K23.2 3

External Ids for SCAMP1-AS1 Gene

Summaries for SCAMP1-AS1 Gene

GeneCards Summary for SCAMP1-AS1 Gene

SCAMP1-AS1 (SCAMP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SCAMP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAMP1-AS1 Gene

Genomics for SCAMP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SCAMP1-AS1 Gene

Promoters and enhancers for SCAMP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I078359 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 560 -0.2 -155 3.3 ARNT ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SCAMP1 SCAMP1-AS1 PIR62844 JMY RPL7P23 RPS3AP20 DMGDH PIR51536
GH05I077996 Enhancer 1.3 UCNEbase dbSUPER 13.4 +364.4 364395 0.6 PKNOX1 ARNT FEZF1 GLI4 ZNF2 ZNF121 ZNF213 KLF7 YY2 TSHZ1 SCAMP1-AS1 TRQ-TTG7-1 ENSG00000253572
GH05I078503 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 8.7 -147.5 -147487 8.5 HDGF FEZF1 ZNF2 YY1 ZNF213 FOS ZNF263 REST ZNF592 ZNF610 PIR51536 TBCA LHFPL2 SCAMP1-AS1 SCAMP1 ARSB AP3B1
GH05I077629 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.4 +730.1 730110 2.2 HDGF PKNOX1 FOXA2 SMAD1 ZNF133 ARID4B SIN3A FEZF1 GLI4 ZNF48 SCAMP1-AS1 RPL7P23 GC05M077626 OTP WDR41
GH05I078482 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 8.3 -123.9 -123862 2.8 HDGF PKNOX1 ATF1 ARNT IRF4 TCF12 ZNF766 CBX5 GATA2 E2F8 SCAMP1-AS1 SCAMP1 AP3B1 PIR51536 LHFPL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCAMP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCAMP1-AS1 Gene

Genomic Locations for SCAMP1-AS1 Gene
chr5:78,342,365-78,360,541
(GRCh38/hg38)
Size:
18,177 bases
Orientation:
Minus strand
chr5:77,638,189-77,658,734
(GRCh37/hg19)

Genomic View for SCAMP1-AS1 Gene

Genes around SCAMP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAMP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAMP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAMP1-AS1 Gene

Proteins for SCAMP1-AS1 Gene

Post-translational modifications for SCAMP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAMP1-AS1 Gene

Domains & Families for SCAMP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCAMP1-AS1 Gene

Function for SCAMP1-AS1 Gene

Phenotypes From GWAS Catalog for SCAMP1-AS1 Gene

Phenotypes for SCAMP1-AS1 Gene

GenomeRNAi human phenotypes for SCAMP1-AS1:
genes like me logo Genes that share phenotypes with SCAMP1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAMP1-AS1 Gene

Localization for SCAMP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCAMP1-AS1 Gene

Pathways & Interactions for SCAMP1-AS1 Gene

SuperPathways for SCAMP1-AS1 Gene

No Data Available

Interacting Proteins for SCAMP1-AS1 Gene

Gene Ontology (GO) - Biological Process for SCAMP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCAMP1-AS1 Gene

Drugs & Compounds for SCAMP1-AS1 Gene

No Compound Related Data Available

Transcripts for SCAMP1-AS1 Gene

mRNA/cDNA for SCAMP1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCAMP1-AS1 Gene

No ASD Table

Relevant External Links for SCAMP1-AS1 Gene

GeneLoc Exon Structure for
SCAMP1-AS1
ECgene alternative splicing isoforms for
SCAMP1-AS1

Expression for SCAMP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCAMP1-AS1 Gene

genes like me logo Genes that share expression patterns with SCAMP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAMP1-AS1 Gene

Orthologs for SCAMP1-AS1 Gene

Evolution for SCAMP1-AS1 Gene

ENSEMBL:
Gene Tree for SCAMP1-AS1 (if available)
TreeFam:
Gene Tree for SCAMP1-AS1 (if available)

No data available for Orthologs for SCAMP1-AS1 Gene

Paralogs for SCAMP1-AS1 Gene

No data available for Paralogs for SCAMP1-AS1 Gene

Variants for SCAMP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SCAMP1-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000083589 -- 78,359,737(-) G/C non_coding_transcript_variant
rs1000245021 -- 78,359,640(-) C/T non_coding_transcript_variant
rs1000779760 -- 78,358,724(-) A/G downstream_transcript_variant
rs1001635671 -- 78,361,845(-) C/G upstream_transcript_variant
rs1001663009 -- 78,361,709(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCAMP1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1133094 OTHER inversion 24896259

Additional Variant Information for SCAMP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAMP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCAMP1-AS1 Gene

Disorders for SCAMP1-AS1 Gene

Additional Disease Information for SCAMP1-AS1

No disorders were found for SCAMP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAMP1-AS1 Gene

Publications for SCAMP1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SCAMP1-AS1 Gene

Sources for SCAMP1-AS1 Gene

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