Aliases for SCAMP1-AS1 Gene

Subcategory (RNA class) for SCAMP1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SCAMP1-AS1 Gene

  • SCAMP1 Antisense RNA 1 2 3 5
  • SCAMP1-AS1 2 168
  • CTD-2037K23.2 3
  • HSALNG0042878 167
  • NONHSAG040804 92

External Ids for SCAMP1-AS1 Gene

Summaries for SCAMP1-AS1 Gene

GeneCards Summary for SCAMP1-AS1 Gene

SCAMP1-AS1 (SCAMP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SCAMP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SCAMP1-AS1 Gene

Genomics for SCAMP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SCAMP1-AS1 Gene

Promoters and enhancers for SCAMP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J078359 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 509.9 -0.3 -260 3.6 ZBTB40 ZNF217 EP300 CTCF NRF1 TCF12 POLR2G SP1 GTF2E2 PHF8 SCAMP1 SCAMP1-AS1 NONHSAG040805.2 piR-39799 ENSG00000213757 RPL7P23 JMY DMGDH piR-56341-184
GH05J079234 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 9.8 -877.2 -877160 5.8 FOXK2 ZNF217 EP300 ZSCAN5C SIN3A NRF1 MYC POLR2G USF1 GTF2E2 DMGDH JMY lnc-DMGDH-1 SCAMP1 BHMT ENSG00000251050 SCAMP1-AS1 BHMT2 RF00017-4755 piR-48759-248
GH05J078503 Promoter/Enhancer 1.9 EPDnew FANTOM5 ENCODE CraniofacialAtlas dbSUPER 8.7 -147.5 -147505 8.4 ZNF217 CTCF ZSCAN5C JUND FOS ZFX ZNF639 ZIC2 REST KDM6A LHFPL2 piR-57537 TBCA SCAMP1-AS1 SCAMP1 ARSB AP3B1 lnc-AP3B1-4 lnc-LHFPL2-3
GH05J077996 Enhancer 1.2 UCNEbase dbSUPER 13.4 +364.4 364395 0.6 ZSCAN5C ZNF639 ZNF10 ZNF423 ZNF623 KLF7 ATF2 OSR2 BCL11A MYNN SCAMP1-AS1 TBCA lnc-AP3B1-3 ENSG00000287162
GH05J077629 Enhancer 1.2 FANTOM5 ENCODE 10.4 +730.0 729960 1.6 ZFX CTCF ZIC2 ZBTB10 ZNF423 ZBTB26 KLF4 RELA KLF7 CHD1 SCAMP1-AS1 OTP WDR41 lnc-WDR41-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SCAMP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCAMP1-AS1 Gene

Genomic Locations for SCAMP1-AS1 Gene
chr5:78,342,365-78,360,541
(GRCh38/hg38)
Size:
18,177 bases
Orientation:
Minus strand
chr5:77,638,189-77,658,734
(GRCh37/hg19)
Size:
20,546 bases
Orientation:
Minus strand

Genomic View for SCAMP1-AS1 Gene

Genes around SCAMP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAMP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAMP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAMP1-AS1 Gene

Proteins for SCAMP1-AS1 Gene

Post-translational modifications for SCAMP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAMP1-AS1 Gene

Domains & Families for SCAMP1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SCAMP1-AS1 Gene

Function for SCAMP1-AS1 Gene

Phenotypes From GWAS Catalog for SCAMP1-AS1 Gene

Phenotypes for SCAMP1-AS1 Gene

genes like me logo Genes that share phenotypes with SCAMP1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAMP1-AS1 Gene

Localization for SCAMP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCAMP1-AS1 Gene

Pathways & Interactions for SCAMP1-AS1 Gene

PathCards logo

SuperPathways for SCAMP1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SCAMP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SCAMP1-AS1 Gene

Drugs & Compounds for SCAMP1-AS1 Gene

No Compound Related Data Available

Transcripts for SCAMP1-AS1 Gene

mRNA/cDNA for SCAMP1-AS1 Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SCAMP1-AS1 Gene

No ASD Table

Relevant External Links for SCAMP1-AS1 Gene

GeneLoc Exon Structure for
SCAMP1-AS1

Expression for SCAMP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCAMP1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SCAMP1-AS1

genes like me logo Genes that share expression patterns with SCAMP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAMP1-AS1 Gene

Orthologs for SCAMP1-AS1 Gene

Evolution for SCAMP1-AS1 Gene

ENSEMBL:
Gene Tree for SCAMP1-AS1 (if available)
TreeFam:
Gene Tree for SCAMP1-AS1 (if available)

No data available for Orthologs for SCAMP1-AS1 Gene

Paralogs for SCAMP1-AS1 Gene

No data available for Paralogs for SCAMP1-AS1 Gene

Variants for SCAMP1-AS1 Gene

Additional dbSNP identifiers (rs#s) for SCAMP1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCAMP1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1133094 OTHER inversion 24896259

Additional Variant Information for SCAMP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAMP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SCAMP1-AS1 Gene

Disorders for SCAMP1-AS1 Gene

Additional Disease Information for SCAMP1-AS1

No disorders were found for SCAMP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAMP1-AS1 Gene

Publications for SCAMP1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for SCAMP1-AS1 Gene

Sources for SCAMP1-AS1 Gene