SBNO1-AS1 Gene (RNA Gene)

SBNO1 Antisense RNA 1

GC12P123365
GIFtS:
9
See more...

Aliases for SBNO1-AS1 Gene

Subcategory (RNA class) for SBNO1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SBNO1-AS1 Gene

  • SBNO1 Antisense RNA 1 2 3 5
  • SBNO1-AS1 2 5
  • NONHSAG012608.2 91
  • HSALNG0094721 164
  • Lnc-KMT5A-1 165

External Ids for SBNO1-AS1 Gene

Previous GeneCards Identifiers for SBNO1-AS1 Gene

  • GC12U902884

Summaries for SBNO1-AS1 Gene

GeneCards Summary for SBNO1-AS1 Gene

SBNO1-AS1 (SBNO1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SBNO1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SBNO1-AS1 Gene

Genomics for SBNO1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SBNO1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SBNO1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SBNO1-AS1 Gene

Genomic Locations for SBNO1-AS1 Gene
chr12:123,363,628-123,366,114
(GRCh38/hg38)
Size:
2,487 bases
Orientation:
Plus strand
chr12:123,848,415-123,850,660
(GRCh37/hg19)
Size:
2,246 bases
Orientation:
Plus strand

Genomic View for SBNO1-AS1 Gene

Genes around SBNO1-AS1 on UCSC Golden Path with GeneCards custom track
SBNO1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SBNO1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBNO1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SBNO1-AS1 Gene

Proteins for SBNO1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SBNO1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SBNO1-AS1 Gene

Domains & Families for SBNO1-AS1 Gene

Gene Families for SBNO1-AS1 Gene

HGNC:
genes like me logo Genes that share domains with SBNO1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SBNO1-AS1 Gene

Function for SBNO1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SBNO1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBNO1-AS1 Gene

Localization for SBNO1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SBNO1-AS1 Gene

Pathways & Interactions for SBNO1-AS1 Gene

PathCards logo

SuperPathways for SBNO1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SBNO1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SBNO1-AS1 Gene

Drugs & Compounds for SBNO1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SBNO1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SBNO1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000567623_9606 lncRNA 1920 3

Ensembl: ENST00000602918 (view in UCSC) ,

LNCipedia: lnc-KMT5A-1:16,

NONCODE: NONHSAT031584.2,

URS000025E499_9606 lncRNA 752 3

Ensembl: ENST00000543072 (view in UCSC) ,

LNCipedia: lnc-KMT5A-1:25,

NONCODE: NONHSAT031587.2,

URS0000D78050_9606 lncRNA 469 2

HGNC: 54355,

RefSeq: NR_157805,

URS0000D77F6B_9606 lncRNA 448 1

RefSeq: NR_157806,

URS00008B486F_9606 lncRNA 909 3

LncBook: HSALNT0196334,

LNCipedia: lnc-KMT5A-1:17,

NONCODE: NONHSAT031585.2,

SBNO1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SBNO1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SBNO1-AS1 Gene

No ASD Table

Relevant External Links for SBNO1-AS1 Gene

GeneLoc Exon Structure for
SBNO1-AS1

Expression for SBNO1-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SBNO1-AS1 Gene

Orthologs for SBNO1-AS1 Gene

Evolution for SBNO1-AS1 Gene

ENSEMBL:
Gene Tree for SBNO1-AS1 (if available)
TreeFam:
Gene Tree for SBNO1-AS1 (if available)

No data available for Orthologs for SBNO1-AS1 Gene

Paralogs for SBNO1-AS1 Gene

No data available for Paralogs for SBNO1-AS1 Gene

Variants for SBNO1-AS1 Gene

Additional dbSNP identifiers (rs#s) for SBNO1-AS1 Gene

Additional Variant Information for SBNO1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SBNO1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SBNO1-AS1 Gene

Disorders for SBNO1-AS1 Gene

No disorders were found for SBNO1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SBNO1-AS1 Gene

Publications for SBNO1-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for SBNO1-AS1 Gene

Products for SBNO1-AS1 Gene

Sources for SBNO1-AS1 Gene