Aliases for SBNO1-AS1 Gene

Data sources for SBNO1-AS1 Gene:

Subcategory (RNA class) for SBNO1-AS1 Gene

lncRNA

Aliases for SBNO1-AS1 Gene

External Ids for SBNO1-AS1 Gene

Previous GeneCards Identifiers for SBNO1-AS1 Gene

  • GC12U902884

Summaries for SBNO1-AS1 Gene

GeneCards Summary for SBNO1-AS1 Gene

SBNO1-AS1 (SBNO1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SBNO1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SBNO1-AS1 Gene

Genomics for SBNO1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SBNO1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J123363 Promoter/Enhancer 0.6 Ensembl dbSUPER 250.7 +0.0 22 0.2 ZNF362 SBNO1-AS1 CDK2AP1 MIR8072 SBNO1
GH12J123362 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 17.7 +2.3 2331 4 ZSCAN16 CHD2 TBP ZBTB10 SP1 MXD4 BCL11A CEBPA SIX5 NR2C1 MIR8072 SBNO1 DDX55 RSRC2 ZCCHC8 EIF2B1 TMED2-DT CDK2AP1 MTRFR ATP6V0A2
GH12J123265 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 -92.9 -92880 7.6 ZBTB10 FEZF1 NR2C1 CTCF THAP11 SIN3A REST CUX1 SIN3B FOXA2 CDK2AP1 DDX55 MTRFR EIF2B1 MPHOSPH9 TMED2-DT TCTN2 RSRC2 ZCCHC8 SBNO1-AS1
GH12J123231 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 -129.4 -129378 4.6 CHD2 TBP ZBTB10 SP1 MXD4 FEZF1 NR2C1 MNT IKZF1 SMAD5 MTRFR lnc-CDK2AP1-4 ZCCHC8 RSRC2 DDX55 EIF2B1 CDK2AP1 TMED2-DT MPHOSPH9 KNTC1
GH12J123382 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 +21.7 21664 3.1 ZSCAN16 CHD2 TBP MXD4 ZBTB10 SP1 FEZF1 CEBPA NR2C1 MNT HSALNG0094723 KMT5A lnc-SBNO1-2 TMED2 CDK2AP1 RSRC2 EIF2B1 ZCCHC8 SBNO1-AS1 ABCB9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SBNO1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SBNO1-AS1 Gene

Latest Assembly
chr12:123,362,479-123,366,114
(GRCh38/hg38)
Size:
3,636 bases
Orientation:
Plus strand

Previous Assembly
chr12:123,849,495-123,850,351
(GRCh37/hg19 by Entrez Gene)
Size:
857 bases
Orientation:
Plus strand

chr12:123,848,415-123,850,660
(GRCh37/hg19 by Ensembl)
Size:
2,246 bases
Orientation:
Plus strand

Genomic View for SBNO1-AS1 Gene

Genes around SBNO1-AS1 on UCSC Golden Path with GeneCards custom track
SBNO1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SBNO1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBNO1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBNO1-AS1 Gene

Proteins for SBNO1-AS1 Gene

Post-translational modifications for SBNO1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SBNO1-AS1 Gene

Domains & Families for SBNO1-AS1 Gene

Gene Families for SBNO1-AS1 Gene

genes like me logo Genes that share domains with SBNO1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SBNO1-AS1 Gene

Function for SBNO1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBNO1-AS1 Gene

Localization for SBNO1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SBNO1-AS1 Gene

Pathways & Interactions for SBNO1-AS1 Gene

PathCards logo

SuperPathways for SBNO1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SBNO1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SBNO1-AS1 Gene

Drugs & Compounds for SBNO1-AS1 Gene

No Compound Related Data Available

Transcripts for SBNO1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SBNO1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000567623_9606 lncRNA 1921 3

Ensembl: ENST00000602918 (view in UCSC) ,

LNCipedia: lnc-KMT5A-1:16,

NONCODE: NONHSAT031584.2,

URS000025E499_9606 lncRNA 754 3

Ensembl: ENST00000543072 (view in UCSC) ,

LNCipedia: lnc-KMT5A-1:25,

NONCODE: NONHSAT031587.2,

URS0000D78050_9606 lncRNA 469 1

RefSeq: NR_157805,

URS0000D77F6B_9606 lncRNA 448 1

RefSeq: NR_157806,

URS00008B486F_9606 lncRNA 911 3

LncBook: HSALNT0196334,

LNCipedia: lnc-KMT5A-1:17,

NONCODE: NONHSAT031585.2,

SBNO1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SBNO1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SBNO1-AS1 Gene

No ASD Table

Relevant External Links for SBNO1-AS1 Gene

GeneLoc Exon Structure for
SBNO1-AS1

Expression for SBNO1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SBNO1-AS1 Gene

Orthologs for SBNO1-AS1 Gene

Evolution for SBNO1-AS1 Gene

ENSEMBL:
Gene Tree for SBNO1-AS1 (if available)
TreeFam:
Gene Tree for SBNO1-AS1 (if available)

No data available for Orthologs for SBNO1-AS1 Gene

Paralogs for SBNO1-AS1 Gene

No data available for Paralogs for SBNO1-AS1 Gene

Variants for SBNO1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SBNO1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SBNO1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SBNO1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SBNO1-AS1 Gene

Disorders for SBNO1-AS1 Gene

No disorders were found for SBNO1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SBNO1-AS1 Gene

Publications for SBNO1-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for SBNO1-AS1 Gene

Products for SBNO1-AS1 Gene

Sources for SBNO1-AS1 Gene