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Aliases for SBF2-AS1 Gene

Subcategory (RNA class) for SBF2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SBF2-AS1 Gene

  • SBF2 Antisense RNA 1 2 3 5
  • SBF2 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for SBF2-AS1 Gene

Summaries for SBF2-AS1 Gene

GeneCards Summary for SBF2-AS1 Gene

SBF2-AS1 (SBF2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SBF2-AS1 include Astrocytoma and Esophageal Cancer.

Additional gene information for SBF2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SBF2-AS1 Gene

Genomics for SBF2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SBF2-AS1 Gene

Promoters and enhancers for SBF2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SBF2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SBF2-AS1 Gene

Genomic Locations for SBF2-AS1 Gene
chr11:9,758,292-9,811,335
(GRCh38/hg38)
Size:
53,044 bases
Orientation:
Plus strand
chr11:9,779,839-9,832,866
(GRCh37/hg19)
Size:
53,028 bases
Orientation:
Plus strand

Genomic View for SBF2-AS1 Gene

Genes around SBF2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SBF2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBF2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBF2-AS1 Gene

Proteins for SBF2-AS1 Gene

Post-translational modifications for SBF2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SBF2-AS1 Gene

Domains & Families for SBF2-AS1 Gene

Gene Families for SBF2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SBF2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SBF2-AS1 Gene

Function for SBF2-AS1 Gene

Phenotypes From GWAS Catalog for SBF2-AS1 Gene

Phenotypes for SBF2-AS1 Gene

genes like me logo Genes that share phenotypes with SBF2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBF2-AS1 Gene

Localization for SBF2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SBF2-AS1 Gene

Pathways & Interactions for SBF2-AS1 Gene

PathCards logo

SuperPathways for SBF2-AS1 Gene

No Data Available

Interacting Proteins for SBF2-AS1 Gene

Gene Ontology (GO) - Biological Process for SBF2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SBF2-AS1 Gene

Drugs & Compounds for SBF2-AS1 Gene

No Compound Related Data Available

Transcripts for SBF2-AS1 Gene

mRNA/cDNA for SBF2-AS1 Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNA Central transcripts :

Unigene Clusters for SBF2-AS1 Gene

SBF2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SBF2-AS1 Gene

No ASD Table

Relevant External Links for SBF2-AS1 Gene

GeneLoc Exon Structure for
SBF2-AS1
ECgene alternative splicing isoforms for
SBF2-AS1

Expression for SBF2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SBF2-AS1 Gene

SOURCE GeneReport for Unigene cluster for SBF2-AS1 Gene:

Hs.632156
genes like me logo Genes that share expression patterns with SBF2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SBF2-AS1 Gene

Orthologs for SBF2-AS1 Gene

Evolution for SBF2-AS1 Gene

ENSEMBL:
Gene Tree for SBF2-AS1 (if available)
TreeFam:
Gene Tree for SBF2-AS1 (if available)

No data available for Orthologs for SBF2-AS1 Gene

Paralogs for SBF2-AS1 Gene

No data available for Paralogs for SBF2-AS1 Gene

Variants for SBF2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SBF2-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs10118 benign, Charcot-Marie-Tooth disease, type IV 9,779,054(+) G/A intron_variant
rs1045634 benign, Charcot-Marie-Tooth disease, type IV 9,778,903(+) C/T intron_variant
rs1060499999 likely-pathogenic, Charcot-Marie-Tooth disease, type IV 9,787,633(+) C/T intron_variant
rs114604750 uncertain-significance, Charcot-Marie-Tooth disease, type IV 9,780,127(+) G/A intron_variant
rs115345208 likely-benign, benign, not specified, Charcot-Marie-Tooth disease, type IV 9,790,561(+) T/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SBF2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv51e215 CNV deletion 23714750
esv1086799 CNV deletion 17803354
esv2309802 CNV deletion 18987734
esv2514794 CNV deletion 19546169
esv2660590 CNV deletion 23128226
esv2744095 CNV deletion 23290073
esv2744098 CNV deletion 23290073
esv3579359 CNV loss 25503493
esv8918 CNV loss 19470904
nsv1045550 CNV gain 25217958
nsv1053369 CNV gain 25217958
nsv1119860 CNV deletion 24896259
nsv1150006 CNV deletion 26484159
nsv39331 CNV deletion 16902084
nsv499766 OTHER inversion 21111241
nsv553468 CNV gain 21841781
nsv957841 CNV deletion 24416366

Additional Variant Information for SBF2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SBF2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SBF2-AS1 Gene

Disorders for SBF2-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for SBF2-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
esophageal cancer
  • esophageal cancer, somatic
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SBF2-AS1

genes like me logo Genes that share disorders with SBF2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SBF2-AS1 Gene

Publications for SBF2-AS1 Gene

  1. Transcription Factor NFAT5 Promotes Glioblastoma Cell-driven Angiogenesis via SBF2-AS1/miR-338-3p-Mediated EGFL7 Expression Change. (PMID: 28983240) Yu H … Liu Y (Frontiers in molecular neuroscience 2017) 2 3 58
  2. High expression of long non-coding RNA SBF2-AS1 promotes proliferation in non-small cell lung cancer. (PMID: 27154193) Lv J … Yin R (Journal of experimental & clinical cancer research : CR 2016) 2 3 58
  3. Long non-coding RNA SBF2-AS1 promotes hepatocellular carcinoma progression through regulation of miR-140-5p-TGFBR1 pathway. (PMID: 30115383) Li Y … Lu S (Biochemical and biophysical research communications 2018) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SBF2-AS1 Gene

Sources for SBF2-AS1 Gene

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