Aliases for SBF2-AS1 Gene

Subcategory (RNA class) for SBF2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SBF2-AS1 Gene

  • SBF2 Antisense RNA 1 2 3 5
  • SBF2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SBF2-AS1 2 5
  • NONHSAG007631.2 91
  • HSALNG0082631 164

External Ids for SBF2-AS1 Gene

Previous GeneCards Identifiers for SBF2-AS1 Gene

  • GC11P009781

Summaries for SBF2-AS1 Gene

GeneCards Summary for SBF2-AS1 Gene

SBF2-AS1 (SBF2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SBF2-AS1 include Esophageal Cancer and Lung Cancer.

Additional gene information for SBF2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SBF2-AS1 Gene

Genomics for SBF2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SBF2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SBF2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SBF2-AS1 Gene

Genomic Locations for SBF2-AS1 Gene
chr11:9,758,268-9,811,335
(GRCh38/hg38)
Size:
53,068 bases
Orientation:
Plus strand
chr11:9,779,839-9,832,866
(GRCh37/hg19)
Size:
53,028 bases
Orientation:
Plus strand

Genomic View for SBF2-AS1 Gene

Genes around SBF2-AS1 on UCSC Golden Path with GeneCards custom track
SBF2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SBF2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBF2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBF2-AS1 Gene

Proteins for SBF2-AS1 Gene

Post-translational modifications for SBF2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SBF2-AS1 Gene

Domains & Families for SBF2-AS1 Gene

Gene Families for SBF2-AS1 Gene

genes like me logo Genes that share domains with SBF2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SBF2-AS1 Gene

Function for SBF2-AS1 Gene

Phenotypes From GWAS Catalog for SBF2-AS1 Gene

Phenotypes for SBF2-AS1 Gene

genes like me logo Genes that share phenotypes with SBF2-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBF2-AS1 Gene

Localization for SBF2-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SBF2-AS1 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SBF2-AS1 Gene

Pathways & Interactions for SBF2-AS1 Gene

PathCards logo

SuperPathways for SBF2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SBF2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SBF2-AS1 Gene

Drugs & Compounds for SBF2-AS1 Gene

No Compound Related Data Available

Transcripts for SBF2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SBF2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003A764D_9606 lncRNA 2709 3

Ensembl: ENST00000498905 (view in UCSC) ,

LncBook: HSALNT0171906,

NONCODE: NONHSAT017939.2,

URS000075CBAD_9606 lncRNA 2708 3

HGNC: 27438,

RefSeq: NR_036485,

LncBook: HSALNT0171908,

URS00001CB9EE_9606 lncRNA 854 3

Ensembl: ENST00000499953 (view in UCSC) ,

LncBook: HSALNT0171911,

NONCODE: NONHSAT017941.2,

URS000019518C_9606 lncRNA 767 3

Ensembl: ENST00000534671 (view in UCSC) ,

LncBook: HSALNT0171920,

NONCODE: NONHSAT017944.2,

URS000015F2DE_9606 lncRNA 666 3

Ensembl: ENST00000527406 (view in UCSC) ,

LncBook: HSALNT0171909,

NONCODE: NONHSAT017940.2,

SBF2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SBF2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SBF2-AS1 Gene

No ASD Table

Relevant External Links for SBF2-AS1 Gene

GeneLoc Exon Structure for
SBF2-AS1

Expression for SBF2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SBF2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SBF2-AS1

SOURCE GeneReport for Unigene cluster for SBF2-AS1 Gene:

Hs.632156
genes like me logo Genes that share expression patterns with SBF2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SBF2-AS1 Gene

Orthologs for SBF2-AS1 Gene

Evolution for SBF2-AS1 Gene

ENSEMBL:
Gene Tree for SBF2-AS1 (if available)
TreeFam:
Gene Tree for SBF2-AS1 (if available)

No data available for Orthologs for SBF2-AS1 Gene

Paralogs for SBF2-AS1 Gene

No data available for Paralogs for SBF2-AS1 Gene

Variants for SBF2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SBF2-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
637852 Uncertain Significance: Charcot-Marie-Tooth disease 9,808,144(+) C/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
637853 Uncertain Significance: Charcot-Marie-Tooth disease 9,789,259(+) A/C NONSENSE
637854 Conflicting Interpretations: Charcot-Marie-Tooth disease, type 4B2; Charcot-Marie-Tooth disease 9,807,999(+) C/G NON_CODING_TRANSCRIPT_VARIANT
643464 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,785,221(+) C/A MISSENSE_VARIANT
644027 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,787,635(+) C/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for SBF2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SBF2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv51e215 CNV deletion 23714750
esv1086799 CNV deletion 17803354
esv2309802 CNV deletion 18987734
esv2514794 CNV deletion 19546169
esv2660590 CNV deletion 23128226
esv2744095 CNV deletion 23290073
esv2744098 CNV deletion 23290073
esv3579359 CNV loss 25503493
esv8918 CNV loss 19470904
nsv1045550 CNV gain 25217958
nsv1053369 CNV gain 25217958
nsv1119860 CNV deletion 24896259
nsv1150006 CNV deletion 26484159
nsv39331 CNV deletion 16902084
nsv499766 OTHER inversion 21111241
nsv553468 CNV gain 21841781
nsv957841 CNV deletion 24416366

Additional Variant Information for SBF2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SBF2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SBF2-AS1 Gene

Disorders for SBF2-AS1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for SBF2-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
esophageal cancer
  • esophageal cancer, somatic
lung cancer
  • adenocarcinoma of lung
charcot-marie-tooth disease, type 4b2
  • cmt4b2
charcot-marie-tooth disease
  • peroneal muscular atrophy
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SBF2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SBF2-AS1 Gene

Publications for SBF2-AS1 Gene

  1. Transcription Factor NFAT5 Promotes Glioblastoma Cell-driven Angiogenesis via SBF2-AS1/miR-338-3p-Mediated EGFL7 Expression Change. (PMID: 28983240) Yu H … Liu Y (Frontiers in molecular neuroscience 2017) 2 3
  2. High expression of long non-coding RNA SBF2-AS1 promotes proliferation in non-small cell lung cancer. (PMID: 27154193) Lv J … Yin R (Journal of experimental & clinical cancer research : CR 2016) 2 3
  3. LncRNA SBF2-AS1 promotes the progression of cervical cancer by regulating miR-361-5p/FOXM1 axis. (PMID: 30856345) Gao F … Yang J (Artificial cells, nanomedicine, and biotechnology 2019) 3
  4. Long noncoding RNA SBF2-AS1 promotes colorectal cancer proliferation and invasion by inhibiting miR-619-5p activity and facilitating HDAC3 expression. (PMID: 30912164) Chen G … Gao MZ (Journal of cellular physiology 2019) 3
  5. Exosomal transfer of long non-coding RNA SBF2-AS1 enhances chemoresistance to temozolomide in glioblastoma. (PMID: 30992025) Zhang Z … You Y (Journal of experimental & clinical cancer research : CR 2019) 3

Products for SBF2-AS1 Gene

Sources for SBF2-AS1 Gene