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Aliases for SATB2-AS1 Gene

Subcategory (RNA class) for SATB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SATB2-AS1 Gene

  • SATB2 Antisense RNA 1 2 3 5
  • SATB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SATB2-AS1 Gene

Previous GeneCards Identifiers for SATB2-AS1 Gene

  • GC02P200323

Summaries for SATB2-AS1 Gene

GeneCards Summary for SATB2-AS1 Gene

SATB2-AS1 (SATB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SATB2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SATB2-AS1 Gene

Genomics for SATB2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SATB2-AS1 Gene

Promoters and enhancers for SATB2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I199454 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.6 1585 10.3 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 SATB2 SATB2-AS1 TYW5
GH02I199471 Promoter/Enhancer 1.1 EPDnew dbSUPER 0.4 +13.6 13586 0.1 CTCF MAZ GLIS2 SUZ12 ZEB2 ZBTB8A ZFX EZH2 SATB2 SATB2-AS1 LINC01877
GH02I199452 Enhancer 1 Ensembl dbSUPER 0.4 -5.2 -5180 0.6 PKNOX1 INSM2 MZF1 FEZF1 ZNF213 ZSCAN5C ZEB2 TSHZ1 ZNF843 PRDM6 SATB2-AS1 SATB2 GC02M199366
GH02I199472 Enhancer 1 ENCODE dbSUPER 0.4 +13.9 13933 0.2 CTCF RB1 SUZ12 ARID4B ZNF2 ZNF48 RAD21 HIC1 ZNF335 CCNT2 SATB2 SATB2-AS1 LINC01877
GH02I199466 Promoter/Enhancer 0.9 EPDnew dbSUPER 0.4 +7.4 7438 0.1 POLR2A EZH2 SATB2 SATB2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SATB2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SATB2-AS1 Gene

Genomic Locations for SATB2-AS1 Gene
chr2:199,457,700-199,476,935
(GRCh38/hg38)
Size:
19,236 bases
Orientation:
Plus strand
chr2:200,322,423-200,341,658
(GRCh37/hg19)

Genomic View for SATB2-AS1 Gene

Genes around SATB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SATB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SATB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SATB2-AS1 Gene

Proteins for SATB2-AS1 Gene

Post-translational modifications for SATB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SATB2-AS1 Gene

Domains & Families for SATB2-AS1 Gene

Gene Families for SATB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SATB2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SATB2-AS1 Gene

Function for SATB2-AS1 Gene

Phenotypes for SATB2-AS1 Gene

GenomeRNAi human phenotypes for SATB2-AS1:
genes like me logo Genes that share phenotypes with SATB2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SATB2-AS1 Gene

Localization for SATB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SATB2-AS1 Gene

Pathways & Interactions for SATB2-AS1 Gene

SuperPathways for SATB2-AS1 Gene

No Data Available

Interacting Proteins for SATB2-AS1 Gene

Gene Ontology (GO) - Biological Process for SATB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SATB2-AS1 Gene

Drugs & Compounds for SATB2-AS1 Gene

No Compound Related Data Available

Transcripts for SATB2-AS1 Gene

mRNA/cDNA for SATB2-AS1 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SATB2-AS1 Gene

SATB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SATB2-AS1 Gene

No ASD Table

Relevant External Links for SATB2-AS1 Gene

GeneLoc Exon Structure for
SATB2-AS1
ECgene alternative splicing isoforms for
SATB2-AS1

Expression for SATB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SATB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SATB2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x32.8).

SOURCE GeneReport for Unigene cluster for SATB2-AS1 Gene:

Hs.721226
genes like me logo Genes that share expression patterns with SATB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SATB2-AS1 Gene

Orthologs for SATB2-AS1 Gene

Evolution for SATB2-AS1 Gene

ENSEMBL:
Gene Tree for SATB2-AS1 (if available)
TreeFam:
Gene Tree for SATB2-AS1 (if available)

No data available for Orthologs for SATB2-AS1 Gene

Paralogs for SATB2-AS1 Gene

No data available for Paralogs for SATB2-AS1 Gene

Variants for SATB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SATB2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001323563 -- 199,473,079(+) G/A downstream_transcript_variant
rs1001919003 -- 199,467,229(+) G/T upstream_transcript_variant
rs1003049641 -- 199,470,100(+) G/T non_coding_transcript_variant
rs1003220303 -- 199,470,056(+) T/G non_coding_transcript_variant
rs1003436355 -- 199,471,508(+) G/A non_coding_transcript_variant

Additional Variant Information for SATB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SATB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SATB2-AS1 Gene

Disorders for SATB2-AS1 Gene

Additional Disease Information for SATB2-AS1

No disorders were found for SATB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SATB2-AS1 Gene

Publications for SATB2-AS1 Gene

  1. A novel antisense long non-coding RNA SATB2-AS1 overexpresses in osteosarcoma and increases cell proliferation and growth. (PMID: 28190168) Liu SH … Guo QF (Molecular and cellular biochemistry 2017) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SATB2-AS1 Gene

Sources for SATB2-AS1 Gene

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