Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SAPCD1-AS1 Gene

Subcategory (RNA class) for SAPCD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAPCD1-AS1 Gene

  • SAPCD1 Antisense RNA 1 2 3 5
  • C6orf26 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SAPCD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG32J3.18 3
  • C6orf26-AS1 3

External Ids for SAPCD1-AS1 Gene

Previous HGNC Symbols for SAPCD1-AS1 Gene

  • C6orf26-AS1

Previous GeneCards Identifiers for SAPCD1-AS1 Gene

  • GC06M031739
  • GC00U935865

Summaries for SAPCD1-AS1 Gene

GeneCards Summary for SAPCD1-AS1 Gene

SAPCD1-AS1 (SAPCD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SAPCD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAPCD1-AS1 Gene

Genomics for SAPCD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SAPCD1-AS1 Gene

Promoters and enhancers for SAPCD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I031762 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 550.8 +2.0 1994 1.5 HDGF CTCF KLF1 SAP130 NEUROD1 ZIC2 RAD21 TEAD3 CTBP1 POLR2A SAPCD1 SAPCD1-AS1 DDX39B SKIV2L ATF6B LY6G5B LSM2 RPL3P2 NFKBIL1 TCF19
GH06I031765 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -0.7 -713 1 DRAP1 ELF3 SOX13 TFAP4 SAP130 ARID4B KMT2B RAD21 ZNF48 POLR2A SAPCD1-AS1 C4A LY6G5C VWA7 ATP6V1G2
GH06I031733 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.1 +28.1 28133 8.5 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 MSH5 CLIC1 DDX39B LY6G5B ATF6B LSM2 CSNK2B SKIV2L GPANK1 BAG6
GH06I031813 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.7 -60.3 -60288 25.6 CLOCK ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 C6orf48 HSPA1B HSPA1A HSPA1L GC06P032039 ATF6B DDX39B LY6G5B LSM2 BAG6
GH06I031805 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.6 -41.2 -41213 2 HDGF FOXA2 PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 LSM2 MSH5 ATF6B LY6G5B DDX39B SKIV2L PBX2 CSNK2B RPL3P2 VARS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SAPCD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SAPCD1-AS1 Gene

Genomic Locations for SAPCD1-AS1 Gene
chr6:31,764,135-31,765,588
(GRCh38/hg38)
Size:
1,454 bases
Orientation:
Minus strand

Genomic View for SAPCD1-AS1 Gene

Genes around SAPCD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAPCD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAPCD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SAPCD1-AS1 Gene

Post-translational modifications for SAPCD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAPCD1-AS1 Gene

Domains & Families for SAPCD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAPCD1-AS1 Gene

Function for SAPCD1-AS1 Gene

Phenotypes From GWAS Catalog for SAPCD1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAPCD1-AS1 Gene

Localization for SAPCD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAPCD1-AS1 Gene

Pathways & Interactions for SAPCD1-AS1 Gene

SuperPathways for SAPCD1-AS1 Gene

No Data Available

Interacting Proteins for SAPCD1-AS1 Gene

Gene Ontology (GO) - Biological Process for SAPCD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAPCD1-AS1 Gene

Drugs & Compounds for SAPCD1-AS1 Gene

No Compound Related Data Available

Transcripts for SAPCD1-AS1 Gene

mRNA/cDNA for SAPCD1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAPCD1-AS1 Gene

No ASD Table

Relevant External Links for SAPCD1-AS1 Gene

GeneLoc Exon Structure for
SAPCD1-AS1
ECgene alternative splicing isoforms for
SAPCD1-AS1

Expression for SAPCD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAPCD1-AS1 Gene

genes like me logo Genes that share expression patterns with SAPCD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAPCD1-AS1 Gene

Orthologs for SAPCD1-AS1 Gene

Evolution for SAPCD1-AS1 Gene

ENSEMBL:
Gene Tree for SAPCD1-AS1 (if available)
TreeFam:
Gene Tree for SAPCD1-AS1 (if available)

No data available for Orthologs for SAPCD1-AS1 Gene

Paralogs for SAPCD1-AS1 Gene

No data available for Paralogs for SAPCD1-AS1 Gene

Variants for SAPCD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAPCD1-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs6905572 benign, not specified 31,764,104(-) C/G/T downstream_transcript_variant
rs1002390962 -- 31,766,182(-) G/C upstream_transcript_variant
rs1002603558 -- 31,767,304(-) G/A/C upstream_transcript_variant
rs1005843631 -- 31,765,355(-) C/A intron_variant
rs1006120529 -- 31,764,975(-) C/T intron_variant

Additional Variant Information for SAPCD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAPCD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SAPCD1-AS1 Gene

Disorders for SAPCD1-AS1 Gene

Additional Disease Information for SAPCD1-AS1

No disorders were found for SAPCD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAPCD1-AS1 Gene

Publications for SAPCD1-AS1 Gene

No publications were found for SAPCD1-AS1 Gene.

Products for SAPCD1-AS1 Gene

Sources for SAPCD1-AS1 Gene

Content
Loading form....