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Aliases for SAP30L-AS1 Gene

Subcategory (RNA class) for SAP30L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAP30L-AS1 Gene

  • SAP30L Antisense RNA 1 (Head To Head) 2 3 5
  • GALNT10 Antisense RNA 1 2 3
  • CTB-157D17.1 3
  • GALNT10-AS1 3

External Ids for SAP30L-AS1 Gene

Previous GeneCards Identifiers for SAP30L-AS1 Gene

  • GC05M153710

Summaries for SAP30L-AS1 Gene

GeneCards Summary for SAP30L-AS1 Gene

SAP30L-AS1 (SAP30L Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SAP30L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAP30L-AS1 Gene

Genomics for SAP30L-AS1 Gene

GeneHancer (GH) Regulatory Elements for SAP30L-AS1 Gene

Promoters and enhancers for SAP30L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I154444 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.4 -388 3.3 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF2 IRF4 YY1 POLR2B E2F8 SAP30L SAP30L-AS1 FAM114A2 GEMIN5 MFAP3 HAND1
GH05I154752 Promoter/Enhancer 2 Ensembl ENCODE dbSUPER 39.1 -311.6 -311633 9.1 CLOCK MLX DMAP1 YY1 E2F8 ZNF143 ZNF263 SP3 MEF2D ZNF610 SAP30L-AS1 CNOT8 GEMIN5 LARP1 MIR1303 FAM114A2 GC05M154784 GC05P154730
GH05I154856 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 26.9 -413.8 -413839 6.2 MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 SSRP1 ZNF610 GLIS1 CNOT8 FAXDC2 SAP30L-AS1 GEMIN5
GH05I154834 Enhancer 1.5 Ensembl ENCODE dbSUPER 31.5 -389.2 -389232 1.7 PKNOX1 FOXA2 MLX ARNT ARID4B FEZF1 ZNF2 YY1 ZNF766 ZNF213 CNOT8 SAP30L-AS1 LARP1 MFAP3 GEMIN5 FAM114A2 FAXDC2 MIR378H
GH05I154583 Enhancer 1.1 FANTOM5 ENCODE 15.3 -138.8 -138792 2 NEUROD1 KLF17 ELK1 ZNF366 RCOR1 FOS DEK SMARCC1 CEBPB GATAD2B HAND1 SAP30L-AS1 MRPL22 SAP30L MIR3141 CIR1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SAP30L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SAP30L-AS1 Gene

Genomic Locations for SAP30L-AS1 Gene
chr5:154,329,437-154,445,850
(GRCh38/hg38)
Size:
116,414 bases
Orientation:
Minus strand
chr5:153,708,997-153,825,410
(GRCh37/hg19)

Genomic View for SAP30L-AS1 Gene

Genes around SAP30L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAP30L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAP30L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAP30L-AS1 Gene

Proteins for SAP30L-AS1 Gene

Post-translational modifications for SAP30L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAP30L-AS1 Gene

Domains & Families for SAP30L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAP30L-AS1 Gene

Function for SAP30L-AS1 Gene

Phenotypes From GWAS Catalog for SAP30L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAP30L-AS1 Gene

Localization for SAP30L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAP30L-AS1 Gene

Pathways & Interactions for SAP30L-AS1 Gene

SuperPathways for SAP30L-AS1 Gene

No Data Available

Interacting Proteins for SAP30L-AS1 Gene

Gene Ontology (GO) - Biological Process for SAP30L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAP30L-AS1 Gene

Drugs & Compounds for SAP30L-AS1 Gene

No Compound Related Data Available

Transcripts for SAP30L-AS1 Gene

mRNA/cDNA for SAP30L-AS1 Gene

(11) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAP30L-AS1 Gene

No ASD Table

Relevant External Links for SAP30L-AS1 Gene

GeneLoc Exon Structure for
SAP30L-AS1
ECgene alternative splicing isoforms for
SAP30L-AS1

Expression for SAP30L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAP30L-AS1 Gene

genes like me logo Genes that share expression patterns with SAP30L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAP30L-AS1 Gene

Orthologs for SAP30L-AS1 Gene

Evolution for SAP30L-AS1 Gene

ENSEMBL:
Gene Tree for SAP30L-AS1 (if available)
TreeFam:
Gene Tree for SAP30L-AS1 (if available)

No data available for Orthologs for SAP30L-AS1 Gene

Paralogs for SAP30L-AS1 Gene

No data available for Paralogs for SAP30L-AS1 Gene

Variants for SAP30L-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAP30L-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000006629 -- 154,406,601(-) A/AA intron_variant
rs1000142160 -- 154,394,347(-) T/C intron_variant
rs1000171391 -- 154,431,377(-) A/G intron_variant
rs1000177408 -- 154,443,797(-) A/G intron_variant
rs1000249477 -- 154,437,113(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SAP30L-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830520 CNV loss 17160897
nsv524343 CNV loss 19592680
nsv5080 CNV insertion 18451855
nsv475475 CNV novel sequence insertion 20440878
nsv1073925 CNV deletion 25765185
nsv1015362 CNV gain 25217958
esv3607243 CNV loss 21293372
esv3607242 CNV loss 21293372
esv3566843 CNV deletion 23714750
esv28214 CNV loss 19812545
esv2730936 CNV deletion 23290073
esv2667405 CNV deletion 23128226
dgv3197n106 CNV deletion 24896259
dgv1052e199 CNV deletion 23128226

Additional Variant Information for SAP30L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAP30L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAP30L-AS1 Gene

Disorders for SAP30L-AS1 Gene

Additional Disease Information for SAP30L-AS1

No disorders were found for SAP30L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAP30L-AS1 Gene

Publications for SAP30L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. A genome-wide association study of behavioral disinhibition. (PMID: 23942779) McGue M … Iacono WG (Behavior genetics 2013) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SAP30L-AS1 Gene

Sources for SAP30L-AS1 Gene

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