Aliases for SAP30-DT Gene

Data sources for SAP30-DT Gene:

Subcategory (RNA class) for SAP30-DT Gene

lncRNA

Aliases for SAP30-DT Gene

External Ids for SAP30-DT Gene

Summaries for SAP30-DT Gene

GeneCards Summary for SAP30-DT Gene

SAP30-DT (SAP30 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SAP30-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SAP30-DT Gene

Genomics for SAP30-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SAP30-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J173366 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.5 1466 7.3 TBP ZBTB10 MXD4 FEZF1 SIX5 MNT IKZF1 SMAD5 ETS1 MBD2 HMGB2 SAP30 SAP30-DT ENSG00000248774 SCRG1 RNU6-1096P CEP44 FBXO8 hsa-miR-5095-383 lnc-SAP30-8
GH04J173288 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 5 +82.7 82742 1.8 HES1 CTCF BHLHE40 ARNT ZNF395 NBN TRIM22 ZEB2 TAL1 SMC3 HSALNG0038582 LOC101930370 SAP30-DT GALNT7 MIR548T HMGB2
GH04J173301 Enhancer 0.9 Ensembl ENCODE dbSUPER 5 +70.2 70150 1 CTCF REST TRIM22 SMC3 RAD21 PRDM6 ZNF143 ZNF592 JUND ZNF654 SCRG1 SAP30-DT HSALNG0038583 HSALNG0038584 HMGB2 GALNT7
GH04J172901 Enhancer 0.6 Ensembl ENCODE 4.5 +471.0 471009 1.6 MAFK FOXA1 DPF2 RFX1 FOS lnc-HMGB2-12 SAP30-DT piR-55948-081 GALNT7
GH04J173572 Enhancer 0.5 dbSUPER 5.9 -201.8 -201769 2.3 MAFF ZNF316 MAFG MAFK EMSY SAP30-DT RF00017-4456 lnc-HAND2-4 HAND2 HAND2-AS1 FBXO8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SAP30-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SAP30-DT Gene

Latest Assembly
chr4:173,343,319-173,372,010
(GRCh38/hg38)
Size:
28,692 bases
Orientation:
Minus strand

Previous Assembly
chr4:174,284,931-174,291,597
(GRCh37/hg19 by Ensembl)
Size:
6,667 bases
Orientation:
Minus strand

Genomic View for SAP30-DT Gene

Genes around SAP30-DT on UCSC Golden Path with GeneCards custom track
SAP30-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SAP30-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAP30-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAP30-DT Gene

Proteins for SAP30-DT Gene

Post-translational modifications for SAP30-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAP30-DT Gene

Domains & Families for SAP30-DT Gene

Gene Families for SAP30-DT Gene

genes like me logo Genes that share domains with SAP30-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SAP30-DT Gene

Function for SAP30-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAP30-DT Gene

Localization for SAP30-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAP30-DT Gene

Pathways & Interactions for SAP30-DT Gene

PathCards logo

SuperPathways for SAP30-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for SAP30-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SAP30-DT Gene

Drugs & Compounds for SAP30-DT Gene

No Compound Related Data Available

Transcripts for SAP30-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SAP30-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000009C2CC_9606 lncRNA 1922 3

Ensembl: ENST00000609900 (view in UCSC) ,

LNCipedia: lnc-HMGB2-15:10,

NONCODE: NONHSAT200693.1,

URS0000550195_9606 lncRNA 286 3

Ensembl: ENST00000608892 (view in UCSC) ,

LNCipedia: lnc-HMGB2-15:6,

NONCODE: NONHSAT200694.1,

URS00003846C4_9606 lncRNA 589 2

Ensembl: ENST00000608794 (view in UCSC) ,

LNCipedia: lnc-HMGB2-15:11,

URS0000EEBE27_9606 lncRNA 5679 1

Ensembl: ENST00000658397 (view in UCSC) ,

URS0000EF5028_9606 lncRNA 1489 1

Ensembl: ENST00000651702 (view in UCSC) ,

SAP30-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SAP30-DT Gene

No ASD Table

Relevant External Links for SAP30-DT Gene

GeneLoc Exon Structure for
SAP30-DT

No data available for mRNA/cDNA for SAP30-DT Gene

Expression for SAP30-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SAP30-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAP30-DT Gene

Orthologs for SAP30-DT Gene

Evolution for SAP30-DT Gene

ENSEMBL:
Gene Tree for SAP30-DT (if available)
TreeFam:
Gene Tree for SAP30-DT (if available)

No data available for Orthologs for SAP30-DT Gene

Paralogs for SAP30-DT Gene

No data available for Paralogs for SAP30-DT Gene

Variants for SAP30-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SAP30-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SAP30-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAP30-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SAP30-DT Gene

Disorders for SAP30-DT Gene

Additional Disease Information for SAP30-DT

Open Targets Platform
Open Targets Platform

No disorders were found for SAP30-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAP30-DT Gene

Publications for SAP30-DT Gene

  1. The lncRNA ENST00000608794 acts as a competing endogenous RNA to regulate PDK4 expression by sponging miR-15b-5p in dexamethasone induced steatosis. (PMID: 31330194) Liu F … He B (Biochimica et biophysica acta. Molecular and cell biology of lipids 2019) 2 3

No data available for Mastermind for SAP30-DT Gene

Products for SAP30-DT Gene

Sources for SAP30-DT Gene