Aliases for SAMSN1-AS1 Gene

Subcategory (RNA class) for SAMSN1-AS1 Gene


Quality Score for this RNA gene is


Aliases for SAMSN1-AS1 Gene

  • SAMSN1 Antisense RNA 1 2 3 5
  • SAMSN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG032392 94
  • SAMSN1-AS1 2

External Ids for SAMSN1-AS1 Gene

Previous GeneCards Identifiers for SAMSN1-AS1 Gene

  • GC00U931928
  • GC21P015955
  • GC21P014582

Summaries for SAMSN1-AS1 Gene

GeneCards Summary for SAMSN1-AS1 Gene

SAMSN1-AS1 (SAMSN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SAMSN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SAMSN1-AS1 Gene

Genomics for SAMSN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SAMSN1-AS1 Gene

Promoters and enhancers for SAMSN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J014538 Enhancer 0.5 dbSUPER 750.6 +0.3 277 1.4 SMARCE1 SMARCA4 TRIM24 POLR2A HDAC1 ZNF316 SOX6 KDM1A SAMSN1-AS1 SAMSN1 piR-61101-420 lnc-HSPA13-4 lnc-HSPA13-5
GH21J014450 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.3 -85.0 -84985 5 ZBTB40 SP1 SREBF1 SMARCE1 CC2D1A ETV6 ELF1 RELA L3MBTL2 DACH1 SAMSN1 SAMSN1-AS1 LIPI HSALNG0131946 piR-31534-423
GH21J014752 Enhancer 1.1 ENCODE dbSUPER 10.4 +215.5 215471 2.1 SMARCE1 RUNX1 CC2D1A ELF1 L3MBTL2 DACH1 TEAD4 ZKSCAN8 GTF2F1 CSDE1 ENSG00000232884 SAMSN1 SAMSN1-AS1 LIPI lnc-SAMSN1-1
GH21J014630 Enhancer 1 Ensembl ENCODE 10.7 +92.2 92166 0.4 SMARCE1 DACH1 TEAD4 CBFA2T2 SMARCA4 TRIM24 GMEB1 DPF2 PKNOX1 HDAC1 SAMSN1 SAMSN1-AS1 piR-61101-421 LOC388813
GH21J014683 Enhancer 1 FANTOM5 ENCODE 10.5 +147.5 147538 5.5 ZNF24 MYC ZNF687 CREM ZBED1 IKZF1 ZNF512 TRIM22 IKZF2 PKNOX1 SAMSN1 SAMSN1-AS1 NRIP1 LOC105372738 piR-31534-424
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SAMSN1-AS1 Gene

Genomic Locations for SAMSN1-AS1 Gene
59,870 bases
Plus strand
16,102 bases
Plus strand

Genomic View for SAMSN1-AS1 Gene

Genes around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMSN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMSN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMSN1-AS1 Gene

Proteins for SAMSN1-AS1 Gene

Post-translational modifications for SAMSN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMSN1-AS1 Gene

Domains & Families for SAMSN1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SAMSN1-AS1 Gene

Function for SAMSN1-AS1 Gene

Phenotypes From GWAS Catalog for SAMSN1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMSN1-AS1 Gene

Localization for SAMSN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAMSN1-AS1 Gene

Pathways & Interactions for SAMSN1-AS1 Gene

PathCards logo

SuperPathways for SAMSN1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SAMSN1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SAMSN1-AS1 Gene

Drugs & Compounds for SAMSN1-AS1 Gene

No Compound Related Data Available

Transcripts for SAMSN1-AS1 Gene

mRNA/cDNA for SAMSN1-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(2) RNACentral transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAMSN1-AS1 Gene

No ASD Table

Relevant External Links for SAMSN1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SAMSN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAMSN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SAMSN1-AS1 Gene

This gene is overexpressed in Testis (x12.2) and Whole Blood (x4.3).

SOURCE GeneReport for Unigene cluster for SAMSN1-AS1 Gene:

genes like me logo Genes that share expression patterns with SAMSN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAMSN1-AS1 Gene

Orthologs for SAMSN1-AS1 Gene

Evolution for SAMSN1-AS1 Gene

Gene Tree for SAMSN1-AS1 (if available)
Gene Tree for SAMSN1-AS1 (if available)

No data available for Orthologs for SAMSN1-AS1 Gene

Paralogs for SAMSN1-AS1 Gene

No data available for Paralogs for SAMSN1-AS1 Gene

Variants for SAMSN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMSN1-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000165207 -- 14,591,565(+) T/C intron_variant
rs1000176177 -- 14,597,484(+) G/A intron_variant
rs1000448418 -- 14,587,904(+) A/C intron_variant
rs1000486089 -- 14,584,733(+) G/A intron_variant
rs1000577905 -- 14,581,362(+) /C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SAMSN1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3646433 CNV gain 21293372
esv3646434 CNV gain 21293372
nsv470879 CNV gain 18288195
nsv587049 CNV loss 21841781
nsv834045 CNV loss 17160897
nsv834046 CNV gain+loss 17160897

Additional Variant Information for SAMSN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMSN1-AS1 Gene

Disorders for SAMSN1-AS1 Gene

Additional Disease Information for SAMSN1-AS1

No disorders were found for SAMSN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMSN1-AS1 Gene

Publications for SAMSN1-AS1 Gene

No publications were found for SAMSN1-AS1 Gene.

Products for SAMSN1-AS1 Gene

Sources for SAMSN1-AS1 Gene