Aliases for SALRNA1 Gene

Subcategory (RNA class) for SALRNA1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SALRNA1 Gene

  • Senescence Associated Long Non-Coding RNA 1 2 3 5
  • SALRNA1 2 168
  • HSALNG0101725 167
  • NONHSAG015159 92
  • XLOC_023166 3
  • SAL-RNA1 3

External Ids for SALRNA1 Gene

Previous GeneCards Identifiers for SALRNA1 Gene

  • GC00U934340
  • GC14U901754

Summaries for SALRNA1 Gene

GeneCards Summary for SALRNA1 Gene

SALRNA1 (Senescence Associated Long Non-Coding RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SALRNA1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SALRNA1 Gene

Genomics for SALRNA1 Gene

GeneHancer (GH) Regulatory Elements for SALRNA1 Gene

Promoters and enhancers for SALRNA1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J060636 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -1.3 -1340 2.8 HDAC2 EZH2 POLR2A CTCF CBX8 PRDM6 SIN3A SMARCA4 RNF2 ZNF202 SALRNA1 C14orf39 SIX1 SIX4 TMEM30B piR-43106-069 lnc-SIX1-2
GH14J060639 Enhancer 0.5 CraniofacialAtlas dbSUPER 500.7 +0.4 368 0.2 CBX8 HLF SALRNA1 lnc-SIX1-1 lnc-SIX1-2
GH14J061376 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.7 +746.0 745955 17.9 ZNF217 CTCF ZSCAN5C ZNF639 ZNF10 EP300 ZNF423 TRIM28 MEF2C RCOR1 PRKCH TMEM30B SALRNA1 ENSG00000258926 piR-57133-155 ENSG00000258989
GH14J060302 Enhancer 0.8 Ensembl ENCODE 4.2 -336.0 -336014 3.6 TGIF2 FOXA2 SAP130 ZBTB33 JUND POU2F2 RAD21 RXRA POLR2A MAX PPM1A LOC101927702 SALRNA1 LINC02322 lnc-PCNX4-3
GH14J060640 Promoter/Enhancer 2.7 VISTA EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +10.9 10929 19.3 FOXK2 CTCF ZSCAN5C SIN3A POLR2G USF1 PHF8 TEAD4 ZFX ZNF639 MIR9718-001 SIX1 TRMT5 C14orf39 SLC38A6 PCNX4 LOC101927702 SIX4 TMEM30B MNAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SALRNA1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SALRNA1 Gene

Genomic Locations for SALRNA1 Gene
chr14:60,639,215-60,727,514
(GRCh38/hg38)
Size:
88,300 bases
Orientation:
Plus strand

Genomic View for SALRNA1 Gene

Genes around SALRNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALRNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALRNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALRNA1 Gene

Proteins for SALRNA1 Gene

Post-translational modifications for SALRNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SALRNA1 Gene

Domains & Families for SALRNA1 Gene

Gene Families for SALRNA1 Gene

genes like me logo Genes that share domains with SALRNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SALRNA1 Gene

Function for SALRNA1 Gene

Phenotypes From GWAS Catalog for SALRNA1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SALRNA1 Gene

Localization for SALRNA1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SALRNA1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SALRNA1 Gene

Pathways & Interactions for SALRNA1 Gene

PathCards logo

SuperPathways for SALRNA1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SALRNA1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SALRNA1 Gene

Drugs & Compounds for SALRNA1 Gene

No Compound Related Data Available

Transcripts for SALRNA1 Gene

mRNA/cDNA for SALRNA1 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SALRNA1 Gene

No ASD Table

Relevant External Links for SALRNA1 Gene

GeneLoc Exon Structure for
SALRNA1

Expression for SALRNA1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SALRNA1 Gene

Orthologs for SALRNA1 Gene

Evolution for SALRNA1 Gene

ENSEMBL:
Gene Tree for SALRNA1 (if available)
TreeFam:
Gene Tree for SALRNA1 (if available)

No data available for Orthologs for SALRNA1 Gene

Paralogs for SALRNA1 Gene

No data available for Paralogs for SALRNA1 Gene

Variants for SALRNA1 Gene

Additional dbSNP identifiers (rs#s) for SALRNA1 Gene

Additional Variant Information for SALRNA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SALRNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SALRNA1 Gene

Disorders for SALRNA1 Gene

Additional Disease Information for SALRNA1

No disorders were found for SALRNA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALRNA1 Gene

Publications for SALRNA1 Gene

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. (PMID: 23758631) Abdelmohsen K … Gorospe M (Aging cell 2013) 2 3 54

Products for SALRNA1 Gene

Sources for SALRNA1 Gene