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Aliases for SALRNA1 Gene

Subcategory (RNA class) for SALRNA1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SALRNA1 Gene

  • Senescence Associated Long Non-Coding RNA 1 2 3 5
  • XLOC_023166 3
  • SAL-RNA1 3

External Ids for SALRNA1 Gene

Previous GeneCards Identifiers for SALRNA1 Gene

  • GC00U934340
  • GC14U901754

Summaries for SALRNA1 Gene

GeneCards Summary for SALRNA1 Gene

SALRNA1 (Senescence Associated Long Non-Coding RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SALRNA1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SALRNA1 Gene

Genomics for SALRNA1 Gene

GeneHancer (GH) Regulatory Elements for SALRNA1 Gene

Promoters and enhancers for SALRNA1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I060636 Enhancer 0.9 Ensembl ENCODE dbSUPER 550.8 -1.2 -1247 2.6 CTCF ZNF202 SUZ12 ZNF143 EZH2 SALRNA1 C14orf39 TRMT5 SIX1 SIX4 TMEM30B LOC105378189 RPS15AP4 GC14M060376
GH14I060639 Enhancer 0.2 dbSUPER 550.8 +0.7 683 0.5 SALRNA1 C14orf39 GC14P060643 LOC105378189 GC14M060376
GH14I061376 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +746.0 745954 17.9 HDGF PKNOX1 CLOCK SMAD1 FEZF1 YBX1 ZNF2 TCF12 ZNF121 ZNF213 PRKCH TMEM30B SALRNA1 LOC105370525 ENSG00000247287 GC14M061347
GH14I060640 Promoter/Enhancer 2.9 VISTA EPDnew Ensembl ENCODE dbSUPER 0.4 +11.0 10968 19.2 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 SIX1 TRMT5 SLC38A6 PCNX4 C14orf39 LOC101927702 SIX4 TMEM30B MNAT1 SIX6
GH14I060624 Enhancer 1 Ensembl ENCODE 0.4 -14.0 -14009 2 ELF3 SOX13 CTCF PKNOX1 FOXA2 SAP130 JUN ARID4B THRB RAD21 C14orf39 SIX4 SALRNA1 LOC105378189 RPS15AP4 GC14M060376
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SALRNA1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SALRNA1 Gene

Genomic Locations for SALRNA1 Gene
3,374 bases
Plus strand

Genomic View for SALRNA1 Gene

Genes around SALRNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALRNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALRNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALRNA1 Gene

Proteins for SALRNA1 Gene

Post-translational modifications for SALRNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SALRNA1 Gene

Domains & Families for SALRNA1 Gene

Gene Families for SALRNA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SALRNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SALRNA1 Gene

Function for SALRNA1 Gene

Phenotypes From GWAS Catalog for SALRNA1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SALRNA1 Gene

Localization for SALRNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SALRNA1 Gene

Pathways & Interactions for SALRNA1 Gene

SuperPathways for SALRNA1 Gene

No Data Available

Interacting Proteins for SALRNA1 Gene

Gene Ontology (GO) - Biological Process for SALRNA1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SALRNA1 Gene

Drugs & Compounds for SALRNA1 Gene

No Compound Related Data Available

Transcripts for SALRNA1 Gene

mRNA/cDNA for SALRNA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SALRNA1 Gene

No ASD Table

Relevant External Links for SALRNA1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SALRNA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SALRNA1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SALRNA1 Gene

Orthologs for SALRNA1 Gene

Evolution for SALRNA1 Gene

Gene Tree for SALRNA1 (if available)
Gene Tree for SALRNA1 (if available)

No data available for Orthologs for SALRNA1 Gene

Paralogs for SALRNA1 Gene

No data available for Paralogs for SALRNA1 Gene

Variants for SALRNA1 Gene

Sequence variations from dbSNP and Humsavar for SALRNA1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1002850553 -- 60,637,539(+) C/G upstream_transcript_variant
rs1003154353 -- 60,639,540(+) G/C non_coding_transcript_variant
rs1003722892 -- 60,639,788(+) G/C non_coding_transcript_variant
rs1004078710 -- 60,637,920(+) A/G upstream_transcript_variant
rs1006103676 -- 60,640,525(+) TT/ downstream_transcript_variant

Additional Variant Information for SALRNA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SALRNA1 Gene

Disorders for SALRNA1 Gene

Additional Disease Information for SALRNA1

No disorders were found for SALRNA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALRNA1 Gene

Publications for SALRNA1 Gene

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. (PMID: 23758631) Abdelmohsen K … Gorospe M (Aging cell 2013) 2 3 58

Products for SALRNA1 Gene

Sources for SALRNA1 Gene

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