Aliases for RXYLT1-AS1 Gene

Data sources for RXYLT1-AS1 Gene:

RNA type for RXYLT1-AS1 Gene

lncRNA

Aliases for RXYLT1-AS1 Gene

External Ids for RXYLT1-AS1 Gene

Previous HGNC Symbols for RXYLT1-AS1 Gene

  • TMEM5-AS1

Summaries for RXYLT1-AS1 Gene

GeneCards Summary for RXYLT1-AS1 Gene

RXYLT1-AS1 (RXYLT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with RXYLT1-AS1 include Muscular Dystrophy-Dystroglycanopathy.

Additional gene information for RXYLT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RXYLT1-AS1 Gene

Genomics for RXYLT1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RXYLT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J063821 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 250.7 -0.3 -279 2.1 FOXA2 TEAD3 ZNF202 YY1 POLR2A PABPC1P4 RXYLT1-AS1 MIR10527 TBK1 ENSG00000243024 XPOT ENSG00000255566 RNU6-1009P SRGAP1 RXYLT1
GH12J063814 Enhancer 0.7 Ensembl ENCODE 0.4 +7.4 7356 1.6 TRIM22 ELF1 JUNB IKZF1 IKZF2 RUNX3 RELB SP1 RXYLT1 DPY19L2 PABPC1P4 RXYLT1-AS1 ENSG00000249753 SRGAP1
GH12J063805 Enhancer 0.7 Ensembl 0.4 +15.9 15855 0.2 CEBPA JUND FOXA1 FOXA2 ZNF623 RXRA RARA ZBTB33 FOXP1 PKNOX1 RXYLT1 ENSG00000255629 RNU6-1009P ENSG00000249753 PABPC1P4 RXYLT1-AS1 SRGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RXYLT1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RXYLT1-AS1 Gene

Latest Assembly
chr12:63,804,739-63,822,156
(GRCh38/hg38)
Size:
17,418 bases
Orientation:
Minus strand

Previous Assembly
chr12:64,202,625-64,215,936
(GRCh37/hg19 by Entrez Gene)
Size:
13,312 bases
Orientation:
Minus strand

chr12:64,202,625-64,215,936
(GRCh37/hg19 by Ensembl)
Size:
13,312 bases
Orientation:
Minus strand

Genomic View for RXYLT1-AS1 Gene

Genes around RXYLT1-AS1 on UCSC Golden Path with GeneCards custom track
RXYLT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RXYLT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RXYLT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RXYLT1-AS1 Gene

Proteins for RXYLT1-AS1 Gene

Post-translational modifications for RXYLT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RXYLT1-AS1 Gene

Domains & Families for RXYLT1-AS1 Gene

Gene Families for RXYLT1-AS1 Gene

genes like me logo Genes that share domains with RXYLT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RXYLT1-AS1 Gene

Function for RXYLT1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RXYLT1-AS1 Gene

Localization for RXYLT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RXYLT1-AS1 Gene

Pathways & Interactions for RXYLT1-AS1 Gene

PathCards logo

SuperPathways for RXYLT1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RXYLT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RXYLT1-AS1 Gene

Drugs & Compounds for RXYLT1-AS1 Gene

No Compound Related Data Available

Transcripts for RXYLT1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RXYLT1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000033973C_9606 lncRNA 563 4

RefSeq: NR_126167,

Ensembl: ENST00000546214 (view in UCSC) ,

LNCipedia: RXYLT1-AS1:4,

NONCODE: NONHSAT029121.2,

URS0000DB7384_9606 lncRNA 1282 1

Ensembl: ENST00000649287 (view in UCSC) ,

URS00008C38C4_9606 lncRNA 489 3

LncBook: HSALNT0190477,

LNCipedia: RXYLT1-AS1:5,

NONCODE: NONHSAT029120.2,

URS0001BE9337_9606 lncRNA 487 1

LncBook: HSALNT0190477,

RXYLT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RXYLT1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RXYLT1-AS1 Gene

No ASD Table

Relevant External Links for RXYLT1-AS1 Gene

GeneLoc Exon Structure for
RXYLT1-AS1

Expression for RXYLT1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RXYLT1-AS1 Gene

Orthologs for RXYLT1-AS1 Gene

Evolution for RXYLT1-AS1 Gene

ENSEMBL:
Gene Tree for RXYLT1-AS1 (if available)
TreeFam:
Gene Tree for RXYLT1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for RXYLT1-AS1

No data available for Orthologs for RXYLT1-AS1 Gene

Paralogs for RXYLT1-AS1 Gene

No data available for Paralogs for RXYLT1-AS1 Gene

Variants for RXYLT1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RXYLT1-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
1019888 Uncertain Significance: not provided 63,808,940(-) G/A
NM_014254.3(RXYLT1):c.1180G>A (p.Ala394Thr)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT
1022295 Uncertain Significance: not provided 63,809,082(-) A/G
NM_014254.3(RXYLT1):c.1322A>G (p.Asn441Ser)
MISSENSE
1045468 Uncertain Significance: not provided 63,808,893(-) C/A
NM_014254.3(RXYLT1):c.1133C>A (p.Ser378Tyr)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT
841255 Uncertain Significance: not provided 63,808,962(-) C/T
NM_014254.3(RXYLT1):c.1202C>T (p.Thr401Ile)
MISSENSE
943216 Uncertain Significance: not provided 63,808,918(-) C/G
NM_014254.3(RXYLT1):c.1158C>G (p.Ile386Met)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RXYLT1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for RXYLT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RXYLT1-AS1
Leiden Open Variation Database (LOVD)
RXYLT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RXYLT1-AS1 Gene

Disorders for RXYLT1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RXYLT1-AS1 Gene - From: GCD

Disorder Aliases PubMed IDs
muscular dystrophy-dystroglycanopathy
  • cmd due to dystroglycanopathy
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RXYLT1-AS1

genes like me logo Genes that share disorders with RXYLT1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RXYLT1-AS1 Gene

Publications for RXYLT1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for RXYLT1-AS1 Gene

Products for RXYLT1-AS1 Gene

Sources for RXYLT1-AS1 Gene