Aliases for RUNX2-AS1 Gene

Data sources for RUNX2-AS1 Gene:

RNA type for RUNX2-AS1 Gene

lncRNA

Aliases for RUNX2-AS1 Gene

External Ids for RUNX2-AS1 Gene

Previous GeneCards Identifiers for RUNX2-AS1 Gene

  • GC06M045556

Summaries for RUNX2-AS1 Gene

GeneCards Summary for RUNX2-AS1 Gene

RUNX2-AS1 (RUNX2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RUNX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RUNX2-AS1 Gene

Genomics for RUNX2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RUNX2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J045576 Promoter 0.6 EPDnew 250.1 +107.9 107938 0.1 ATF1 RFX1 CREB1 RUNX2-AS1 HSALNG0050328 lnc-ENPP4-4 HSALNG0050327 SUPT3H RUNX2 CLIC5
GH06J045585 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 6.9 +96.3 96348 9.6 JUND ATF2 ZBTB10 CEBPB FEZF1 EP300 ZNF843 TCF7L2 PRDM6 ZBTB48 HSALNG0050327 RUNX2-AS1 ENSG00000271857 HSALNG0050328 SUPT3H RUNX2 CLIC5
GH06J045606 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 5.3 +76.2 76180 3.3 JUND CEBPB DEK MAX ZNF217 EP300 CTBP1 RXRA RAD21 RFX5 RUNX2-AS1 RUNX2 ENSG00000271857 HSALNG0050329 HSALNG0050327 SUPT3H CLIC5
GH06J045649 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 4.9 +33.6 33583 2.6 JUND MAX EP300 POLR2A ZNF512 MCM5 FOS lnc-RUNX2-2 ENSG00000271857 RUNX2-AS1 RUNX2 HSALNG0050331 SUPT3H CLIC5
GH06J045654 Enhancer 0.9 ENCODE dbSUPER 4.7 +28.5 28469 4.5 JUND ZIC2 CEBPB ZNF341 EP300 PRDM1 STAT3 TBP TCF7L2 USF2 ENSG00000271857 RUNX2-AS1 lnc-RUNX2-2 HSALNG0050331 SUPT3H RUNX2 CLIC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RUNX2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RUNX2-AS1 Gene

Latest Assembly
chr6:45,554,330-45,684,749
(GRCh38/hg38)
Size:
130,420 bases
Orientation:
Minus strand

Previous Assembly
chr6:45,541,083-45,544,507
(GRCh37/hg19 by Ensembl)
Size:
3,425 bases
Orientation:
Minus strand

Genomic View for RUNX2-AS1 Gene

Genes around RUNX2-AS1 on UCSC Golden Path with GeneCards custom track
RUNX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RUNX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUNX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUNX2-AS1 Gene

Proteins for RUNX2-AS1 Gene

Post-translational modifications for RUNX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUNX2-AS1 Gene

Domains & Families for RUNX2-AS1 Gene

Gene Families for RUNX2-AS1 Gene

genes like me logo Genes that share domains with RUNX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RUNX2-AS1 Gene

Function for RUNX2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUNX2-AS1 Gene

Localization for RUNX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RUNX2-AS1 Gene

Pathways & Interactions for RUNX2-AS1 Gene

PathCards logo

SuperPathways for RUNX2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RUNX2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RUNX2-AS1 Gene

Drugs & Compounds for RUNX2-AS1 Gene

No Compound Related Data Available

Transcripts for RUNX2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RUNX2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000366D4F_9606 lncRNA 1513 2

Ensembl: ENST00000563807 (view in UCSC) ,

LNCipedia: RUNX2-AS1:24,

URS00008BF2FC_9606 lncRNA 2660 3

LncBook: HSALNT0106663,

LNCipedia: RUNX2-AS1:32,

NONCODE: NONHSAT112988.2,

URS00008B371F_9606 lncRNA 2513 3

LncBook: HSALNT0106664,

LNCipedia: RUNX2-AS1:25,

NONCODE: NONHSAT112989.2,

URS00008BE4EA_9606 lncRNA 2243 3

LncBook: HSALNT0106661,

LNCipedia: RUNX2-AS1:20,

NONCODE: NONHSAT112986.2,

URS00008B7686_9606 lncRNA 2172 3

LncBook: HSALNT0106662,

LNCipedia: RUNX2-AS1:21,

NONCODE: NONHSAT112987.2,

RUNX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RUNX2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RUNX2-AS1 Gene

No ASD Table

Relevant External Links for RUNX2-AS1 Gene

GeneLoc Exon Structure for
RUNX2-AS1

Expression for RUNX2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RUNX2-AS1 Gene

Orthologs for RUNX2-AS1 Gene

Evolution for RUNX2-AS1 Gene

ENSEMBL:
Gene Tree for RUNX2-AS1 (if available)
TreeFam:
Gene Tree for RUNX2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for RUNX2-AS1

No data available for Orthologs for RUNX2-AS1 Gene

Paralogs for RUNX2-AS1 Gene

No data available for Paralogs for RUNX2-AS1 Gene

Variants for RUNX2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RUNX2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for RUNX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RUNX2-AS1
Leiden Open Variation Database (LOVD)
RUNX2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RUNX2-AS1 Gene

Disorders for RUNX2-AS1 Gene

Additional Disease Information for RUNX2-AS1

No disorders were found for RUNX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUNX2-AS1 Gene

Publications for RUNX2-AS1 Gene

  1. Parathyroid hormone-stimulation of Runx2 during osteoblast differentiation via the regulation of lnc-SUPT3H-1:16 (RUNX2-AS1:32) and miR-6797-5p. (PMID: 30562548) Arumugam B … Selvamurugan N (Biochimie 2019) 3
  2. Exosome-mediated transfer of lncRUNX2-AS1 from multiple myeloma cells to MSCs contributes to osteogenesis. (PMID: 29895968) Li B … Zhuang W (Oncogene 2018) 3

Products for RUNX2-AS1 Gene

Sources for RUNX2-AS1 Gene