Aliases for RTRAFP2 Gene

Aliases for RTRAFP2 Gene

  • RTRAF Pseudogene 2 2 3 5
  • RNA Transcription, Translation And Transport Factor Pseudogene 3
  • RTRAFP2 5

External Ids for RTRAFP2 Gene

Summaries for RTRAFP2 Gene

GeneCards Summary for RTRAFP2 Gene

RTRAFP2 (RTRAF Pseudogene 2) is a Pseudogene.

Additional gene information for RTRAFP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RTRAFP2 Gene

Genomics for RTRAFP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RTRAFP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J095439 Enhancer 0.7 Ensembl ENCODE 600.7 +0.5 457 1.4 ZNF316 MAFF MAFK MAFG SIN3A NANOG POU5F1 EMSY RTRAFP2 TTC37 lnc-FAM81B-1 FAM81B RF00017-4797
GH05J095438 Enhancer 0.2 Ensembl 600.7 -1.5 -1543 0.6 RTRAFP2 TTC37 LOC105379089 FAM81B RF00017-4797
GH05J095392 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.3 -46.9 -46943 1.4 RFX1 KDM1A BACH1 JUND FOXA1 FOXJ2 EP300 NFE2 ZNF316 MAFF LOC105379089 FAM81B ARSK RTRAFP2 TTC37 RF00017-4797
GH05J095445 Enhancer 0.7 Ensembl ENCODE 0.4 +6.7 6657 2.6 CEBPB FOSL1 EP300 EBF1 CEBPG TEAD4 CBFA2T3 TTC37 FAM81B RNU6-308P RTRAFP2 lnc-FAM81B-1 RF00017-4797
GH05J095448 Enhancer 0.4 Ensembl 0.4 +9.2 9157 0.8 ZNF7 ESR1 MYNN TTC37 FAM81B RTRAFP2 lnc-FAM81B-1 RF00017-4797
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RTRAFP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RTRAFP2 Gene

Genomic Locations for RTRAFP2 Gene
chr5:95,440,044-95,440,848
(GRCh38/hg38)
Size:
805 bases
Orientation:
Plus strand
chr5:94,775,748-94,776,391
(GRCh37/hg19)
Size:
644 bases
Orientation:
Plus strand

Genomic View for RTRAFP2 Gene

Genes around RTRAFP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RTRAFP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RTRAFP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RTRAFP2 Gene

Proteins for RTRAFP2 Gene

Post-translational modifications for RTRAFP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RTRAFP2 Gene

Domains & Families for RTRAFP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RTRAFP2 Gene

Function for RTRAFP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RTRAFP2 Gene

Localization for RTRAFP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RTRAFP2 Gene

Pathways & Interactions for RTRAFP2 Gene

PathCards logo

SuperPathways for RTRAFP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RTRAFP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RTRAFP2 Gene

Drugs & Compounds for RTRAFP2 Gene

No Compound Related Data Available

Transcripts for RTRAFP2 Gene

mRNA/cDNA for RTRAFP2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RTRAFP2 Gene

No ASD Table

Relevant External Links for RTRAFP2 Gene

GeneLoc Exon Structure for
RTRAFP2

Expression for RTRAFP2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RTRAFP2 Gene

Orthologs for RTRAFP2 Gene

Evolution for RTRAFP2 Gene

ENSEMBL:
Gene Tree for RTRAFP2 (if available)
TreeFam:
Gene Tree for RTRAFP2 (if available)

No data available for Orthologs for RTRAFP2 Gene

Paralogs for RTRAFP2 Gene

No data available for Paralogs for RTRAFP2 Gene

Variants for RTRAFP2 Gene

Additional Variant Information for RTRAFP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RTRAFP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RTRAFP2 Gene

Disorders for RTRAFP2 Gene

No disorders were found for RTRAFP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RTRAFP2 Gene

Publications for RTRAFP2 Gene

No publications were found for RTRAFP2 Gene.

No data available for Mastermind for RTRAFP2 Gene

Products for RTRAFP2 Gene

Sources for RTRAFP2 Gene