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Aliases for RTN3P1 Gene

Aliases for RTN3P1 Gene

  • Reticulon 3 Pseudogene 1 2 3 5
  • Reticulon 3 Pseudogene 2
  • 2NSP-Like Protein II 3
  • NSPLII 3
  • RTN3PS 3

External Ids for RTN3P1 Gene

Previous HGNC Symbols for RTN3P1 Gene

  • RTN3PS

Previous GeneCards Identifiers for RTN3P1 Gene

  • GC04P146297

Summaries for RTN3P1 Gene

GeneCards Summary for RTN3P1 Gene

RTN3P1 (Reticulon 3 Pseudogene 1) is a Pseudogene.

Additional gene information for RTN3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RTN3P1 Gene

Genomics for RTN3P1 Gene

GeneHancer (GH) Regulatory Elements for RTN3P1 Gene

Promoters and enhancers for RTN3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I144644 Promoter/Enhancer 2.8 VISTA UCNEbase EPDnew Ensembl ENCODE dbSUPER 5.8 -728.7 -728717 4.3 HDAC1 MZF1 ZNF2 ZNF335 TCF12 GLIS2 SCRT2 ZNF398 REST ZNF843 HHIP RTN3P1 HHIP-AS1 GYPA
GH04I144651 Enhancer 0.6 dbSUPER 5.6 -720.3 -720278 6.8 ZBTB11 ZFP64 ZNF140 ZNF266 ZNF623 ZNF781 ZNF518A ZNF697 ZNF555 ZNF316 ENSG00000248356 OTUD4 ANAPC10 RTN3P1 HHIP HHIP-AS1 GYPA
GH04I144650 Enhancer 0.5 Ensembl dbSUPER 5.3 -724.7 -724679 0.6 PKNOX1 RTN3P1 HHIP HHIP-AS1 GYPA
GH04I144634 Enhancer 0.5 dbSUPER 5.3 -740.1 -740113 2.5 PKNOX1 IKZF1 EBF1 ETV6 IKZF2 SPI1 RTN3P1 HHIP KRT18P51 GYPA
GH04I144658 Enhancer 0.5 dbSUPER 5.3 -714.6 -714562 4.6 PRDM6 TEAD4 ZBTB11 ZNF140 ZNF266 ZNF623 MAFK HHIP-AS1 ENSG00000248356 RTN3P1 HHIP GYPA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RTN3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RTN3P1 Gene

Genomic Locations for RTN3P1 Gene
chr4:145,375,380-145,377,977
(GRCh38/hg38)
Size:
2,598 bases
Orientation:
Plus strand
chr4:146,296,532-146,299,129
(GRCh37/hg19)

Genomic View for RTN3P1 Gene

Genes around RTN3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RTN3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RTN3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RTN3P1 Gene

Proteins for RTN3P1 Gene

Post-translational modifications for RTN3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RTN3P1 Gene

Domains & Families for RTN3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RTN3P1 Gene

Function for RTN3P1 Gene

Phenotypes From GWAS Catalog for RTN3P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RTN3P1 Gene

Localization for RTN3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RTN3P1 Gene

Pathways & Interactions for RTN3P1 Gene

SuperPathways for RTN3P1 Gene

No Data Available

Interacting Proteins for RTN3P1 Gene

Gene Ontology (GO) - Biological Process for RTN3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RTN3P1 Gene

Drugs & Compounds for RTN3P1 Gene

No Compound Related Data Available

Transcripts for RTN3P1 Gene

mRNA/cDNA for RTN3P1 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RTN3P1 Gene

No ASD Table

Relevant External Links for RTN3P1 Gene

GeneLoc Exon Structure for
RTN3P1
ECgene alternative splicing isoforms for
RTN3P1

Expression for RTN3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RTN3P1 Gene

mRNA differential expression in normal tissues according to GTEx for RTN3P1 Gene

This gene is overexpressed in Whole Blood (x6.1), Brain - Frontal Cortex (BA9) (x4.9), and Brain - Anterior cingulate cortex (BA24) (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of RTN3P1 Gene:

RTN3P1
genes like me logo Genes that share expression patterns with RTN3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RTN3P1 Gene

Orthologs for RTN3P1 Gene

Evolution for RTN3P1 Gene

ENSEMBL:
Gene Tree for RTN3P1 (if available)
TreeFam:
Gene Tree for RTN3P1 (if available)

No data available for Orthologs for RTN3P1 Gene

Paralogs for RTN3P1 Gene

No data available for Paralogs for RTN3P1 Gene

Variants for RTN3P1 Gene

Additional Variant Information for RTN3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RTN3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RTN3P1 Gene

Disorders for RTN3P1 Gene

No disorders were found for RTN3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RTN3P1 Gene

Publications for RTN3P1 Gene

  1. A reticular rhapsody: phylogenic evolution and nomenclature of the RTN/Nogo gene family. (PMID: 12832288) Oertle T … Schwab ME (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2003) 2 3 58
  2. Cloning of a novel member of the reticulon gene family (RTN3): gene structure and chromosomal localization to 11q13. (PMID: 10331947) Moreira EF … Rodriguez IR (Genomics 1999) 3 58

Products for RTN3P1 Gene

Sources for RTN3P1 Gene

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