Aliases for RTCA-AS1 Gene

Subcategory (RNA class) for RTCA-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for RTCA-AS1 Gene

  • RTCA Antisense RNA 1 2 3 5
  • RTCA-AS1 2 168
  • HSALNG0005524 167
  • NONHSAG002212 92

External Ids for RTCA-AS1 Gene

Summaries for RTCA-AS1 Gene

GeneCards Summary for RTCA-AS1 Gene

RTCA-AS1 (RTCA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RTCA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RTCA-AS1 Gene

Genomics for RTCA-AS1 Gene

GeneHancer (GH) Regulatory Elements for RTCA-AS1 Gene

Promoters and enhancers for RTCA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J100265 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.2 -222 2.8 ZBTB40 SIN3A NRF1 POLR2G ZFX POLR2A ZBTB10 ZBTB11 ZNF423 ZBTB26 RTCA RTCA-AS1 DBT piR-41306-013 lnc-DBT-2
GH01J099687 Enhancer 0.2 dbSUPER 5.5 +578.3 578263 0.7 PALMD RTCA-AS1 HMGB3P10 piR-48759-018
GH01J100270 Enhancer 0.2 Ensembl 0.7 -4.1 -4122 0.2 piR-41306-013 RTCA RTCA-AS1 lnc-DBT-2
GH01J100257 Enhancer 0.2 Ensembl 0.4 +8.7 8678 0.2 lnc-RTCA-1 RTCA-AS1 piR-46847-011
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RTCA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RTCA-AS1 Gene

Genomic Locations for RTCA-AS1 Gene
chr1:100,251,528-100,266,179
(GRCh38/hg38)
Size:
14,652 bases
Orientation:
Minus strand
chr1:100,729,565-100,731,703
(GRCh37/hg19)
Size:
2,139 bases
Orientation:
Minus strand

Genomic View for RTCA-AS1 Gene

Genes around RTCA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RTCA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RTCA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RTCA-AS1 Gene

Proteins for RTCA-AS1 Gene

Post-translational modifications for RTCA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RTCA-AS1 Gene

Domains & Families for RTCA-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RTCA-AS1 Gene

Function for RTCA-AS1 Gene

Phenotypes From GWAS Catalog for RTCA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RTCA-AS1 Gene

Localization for RTCA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RTCA-AS1 Gene

Pathways & Interactions for RTCA-AS1 Gene

PathCards logo

SuperPathways for RTCA-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RTCA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RTCA-AS1 Gene

Drugs & Compounds for RTCA-AS1 Gene

No Compound Related Data Available

Transcripts for RTCA-AS1 Gene

mRNA/cDNA for RTCA-AS1 Gene

16 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
7 LncBook transcripts :
10 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RTCA-AS1 Gene

No ASD Table

Relevant External Links for RTCA-AS1 Gene

GeneLoc Exon Structure for
RTCA-AS1

Expression for RTCA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RTCA-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RTCA-AS1

genes like me logo Genes that share expression patterns with RTCA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RTCA-AS1 Gene

Orthologs for RTCA-AS1 Gene

Evolution for RTCA-AS1 Gene

ENSEMBL:
Gene Tree for RTCA-AS1 (if available)
TreeFam:
Gene Tree for RTCA-AS1 (if available)

No data available for Orthologs for RTCA-AS1 Gene

Paralogs for RTCA-AS1 Gene

No data available for Paralogs for RTCA-AS1 Gene

Variants for RTCA-AS1 Gene

Additional dbSNP identifiers (rs#s) for RTCA-AS1 Gene

Additional Variant Information for RTCA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RTCA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RTCA-AS1 Gene

Disorders for RTCA-AS1 Gene

Additional Disease Information for RTCA-AS1

No disorders were found for RTCA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RTCA-AS1 Gene

Publications for RTCA-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for RTCA-AS1 Gene

Sources for RTCA-AS1 Gene