This gene encodes a glycoprotein that contains a RING-type zinc finger domain and an SPRY domain of unknown function. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Feb 2015] See more...

Aliases for RSPRY1 Gene

Aliases for RSPRY1 Gene

  • Ring Finger And SPRY Domain Containing 1 2 3 5
  • RING Finger And SPRY Domain-Containing Protein 1 3 4
  • KIAA1972 4
  • SEMDFA 3

External Ids for RSPRY1 Gene

Previous GeneCards Identifiers for RSPRY1 Gene

  • GC16P055779
  • GC16P057220
  • GC16P043089

Summaries for RSPRY1 Gene

Entrez Gene Summary for RSPRY1 Gene

  • This gene encodes a glycoprotein that contains a RING-type zinc finger domain and an SPRY domain of unknown function. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Feb 2015]

GeneCards Summary for RSPRY1 Gene

RSPRY1 (Ring Finger And SPRY Domain Containing 1) is a Protein Coding gene. Diseases associated with RSPRY1 include Spondyloepimetaphyseal Dysplasia, Faden-Alkuraya Type and Brachydactyly. Among its related pathways are MAPK-Erk Pathway. Gene Ontology (GO) annotations related to this gene include binding. An important paralog of this gene is RNF123.

Additional gene information for RSPRY1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RSPRY1 Gene

Genomics for RSPRY1 Gene

GeneHancer (GH) Regulatory Elements for RSPRY1 Gene

Promoters and enhancers for RSPRY1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RSPRY1 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for RSPRY1

Top Transcription factor binding sites by QIAGEN in the RSPRY1 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • IRF-7A
  • MIF-1
  • Pax-5
  • RelA

Genomic Locations for RSPRY1 Gene

Genomic Locations for RSPRY1 Gene
chr16:57,186,137-57,240,473
(GRCh38/hg38)
Size:
54,337 bases
Orientation:
Plus strand
chr16:57,220,049-57,274,387
(GRCh37/hg19)
Size:
54,339 bases
Orientation:
Plus strand

Genomic View for RSPRY1 Gene

Genes around RSPRY1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RSPRY1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RSPRY1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RSPRY1 Gene

Proteins for RSPRY1 Gene

  • Protein details for RSPRY1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96DX4-RSPRY_HUMAN
    Recommended name:
    RING finger and SPRY domain-containing protein 1
    Protein Accession:
    Q96DX4
    Secondary Accessions:
    • Q6UX21
    • Q8ND53

    Protein attributes for RSPRY1 Gene

    Size:
    576 amino acids
    Molecular mass:
    64180 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RSPRY1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RSPRY1 Gene

Post-translational modifications for RSPRY1 Gene

  • Glycosylation at Asn314
  • Ubiquitination at Lys518
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for RSPRY1 Gene

Domains & Families for RSPRY1 Gene

Gene Families for RSPRY1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins
  • Predicted secreted proteins

Protein Domains for RSPRY1 Gene

Suggested Antigen Peptide Sequences for RSPRY1 Gene

GenScript: Design optimal peptide antigens:
  • RING finger and SPRY domain-containing protein 1 (RSPRY_HUMAN)
genes like me logo Genes that share domains with RSPRY1: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RSPRY1 Gene

Function for RSPRY1 Gene

Phenotypes From GWAS Catalog for RSPRY1 Gene

Gene Ontology (GO) - Molecular Function for RSPRY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IBA 21873635
GO:0005515 protein binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with RSPRY1: view
genes like me logo Genes that share phenotypes with RSPRY1: view

Human Phenotype Ontology for RSPRY1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

  • Taconic Biosciences Mouse Models for RSPRY1

CRISPR Products

miRNA for RSPRY1 Gene

miRTarBase miRNAs that target RSPRY1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for RSPRY1 Gene

Localization for RSPRY1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RSPRY1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RSPRY1 gene
Compartment Confidence
extracellular 4
plasma membrane 2
nucleus 1
endoplasmic reticulum 0
cytosol 0

Gene Ontology (GO) - Cellular Components for RSPRY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005737 cytoplasm IBA 21873635
genes like me logo Genes that share ontologies with RSPRY1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for RSPRY1 Gene

Pathways & Interactions for RSPRY1 Gene

PathCards logo

SuperPathways for RSPRY1 Gene

SuperPathway Contained pathways
1 MAPK-Erk Pathway
genes like me logo Genes that share pathways with RSPRY1: view

Pathways by source for RSPRY1 Gene

1 Sino Biological pathway for RSPRY1 Gene

Gene Ontology (GO) - Biological Process for RSPRY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
GO:0051603 proteolysis involved in cellular protein catabolic process IBA 21873635
genes like me logo Genes that share ontologies with RSPRY1: view

No data available for SIGNOR curated interactions for RSPRY1 Gene

Drugs & Compounds for RSPRY1 Gene

No Compound Related Data Available

Transcripts for RSPRY1 Gene

mRNA/cDNA for RSPRY1 Gene

4 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
12 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RSPRY1 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e · 2f ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14 ^ 15a ·
SP1: - - - - - -
SP2: - - - - - - - -
SP3: - - - -
SP4: -
SP5: - - - - - - - - - -
SP6:
SP7: - - -
SP8:
SP9: - - -
SP10: -
SP11:

ExUns: 15b ^ 16 ^ 17 ^ 18 ^ 19
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for RSPRY1 Gene

GeneLoc Exon Structure for
RSPRY1

Expression for RSPRY1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RSPRY1 Gene

Protein differential expression in normal tissues from HIPED for RSPRY1 Gene

This gene is overexpressed in Testis (30.9) and Peripheral blood mononuclear cells (23.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for RSPRY1 Gene



Protein tissue co-expression partners for RSPRY1 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RSPRY1

SOURCE GeneReport for Unigene cluster for RSPRY1 Gene:

Hs.460885

Evidence on tissue expression from TISSUES for RSPRY1 Gene

  • Nervous system(4.7)
  • Liver(4.2)
genes like me logo Genes that share expression patterns with RSPRY1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RSPRY1 Gene

Orthologs for RSPRY1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RSPRY1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RSPRY1 31 30
  • 99.77 (n)
OneToOne
dog
(Canis familiaris)
Mammalia RSPRY1 31 30
  • 94.5 (n)
OneToOne
cow
(Bos Taurus)
Mammalia RSPRY1 31 30
  • 93.81 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rspry1 30
  • 92.42 (n)
mouse
(Mus musculus)
Mammalia Rspry1 17 31 30
  • 92.36 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RSPRY1 31
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RSPRY1 31
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves RSPRY1 31 30
  • 80.29 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RSPRY1 31
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rspry1 30
  • 75.12 (n)
Str.19431 30
African clawed frog
(Xenopus laevis)
Amphibia Xl.22817 30
zebrafish
(Danio rerio)
Actinopterygii rspry1 31 30
  • 70.95 (n)
OneToOne
Dr.13269 30
worm
(Caenorhabditis elegans)
Secernentea F16A11.1 31 30
  • 56.37 (n)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2646 31
  • 54 (a)
OneToOne
Cin.3775 30
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.3775 30
Species where no ortholog for RSPRY1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RSPRY1 Gene

ENSEMBL:
Gene Tree for RSPRY1 (if available)
TreeFam:
Gene Tree for RSPRY1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for RSPRY1: view image

Paralogs for RSPRY1 Gene

Paralogs for RSPRY1 Gene

genes like me logo Genes that share paralogs with RSPRY1: view

Variants for RSPRY1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RSPRY1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
714705 Likely Benign: not provided 57,220,766(+) A/G SYNONYMOUS_VARIANT
720510 Benign: not provided 57,204,847(+) C/T SYNONYMOUS_VARIANT
726447 Likely Benign: not provided 57,204,679(+) C/T SYNONYMOUS_VARIANT
739240 Likely Benign: not provided 57,213,085(+) C/T SYNONYMOUS_VARIANT
742928 Likely Benign: not provided 57,238,875(+) C/G INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for RSPRY1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RSPRY1 Gene

Variant ID Type Subtype PubMed ID
esv2714524 CNV deletion 23290073
esv2714525 CNV deletion 23290073
esv3553473 CNV deletion 23714750
nsv1113812 CNV deletion 24896259
nsv958848 CNV deletion 24416366

Variation tolerance for RSPRY1 Gene

Residual Variation Intolerance Score: 14.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.31; 26.00% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RSPRY1 Gene

Human Gene Mutation Database (HGMD)
RSPRY1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RSPRY1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RSPRY1 Gene

Disorders for RSPRY1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for RSPRY1 Gene - From: UniProtKB/Swiss-Prot, OMIM, ClinVar, GTR, Orphanet, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

RSPRY_HUMAN
  • Spondyloepimetaphyseal dysplasia, Faden-Alkuraya type (SEMDFA) [MIM:616723]: An autosomal recessive skeletal disorder characterized by spondyloepimetaphyseal dysplasia, short stature, facial dysmorphism, short fourth metatarsals, and intellectual disability. {ECO:0000269 PubMed:26365341}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for RSPRY1

genes like me logo Genes that share disorders with RSPRY1: view

No data available for Genatlas for RSPRY1 Gene

Publications for RSPRY1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XXII. The complete sequences of 50 new cDNA clones which code for large proteins. (PMID: 11853319) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 2 3 4 54
  2. Identification of a Recognizable Progressive Skeletal Dysplasia Caused by RSPRY1 Mutations. (PMID: 26365341) Faden M … Alkuraya FS (American journal of human genetics 2015) 3 4 54
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 54

Products for RSPRY1 Gene

Sources for RSPRY1 Gene