Aliases for RRP7BP Gene

Aliases for RRP7BP Gene

  • Ribosomal RNA Processing 7 Homolog B, Pseudogene 2 3 5
  • DJ222E13.2 2 3
  • RRP7B 3 4
  • Ribosomal RNA Processing 7 Homolog B (S. Cerevisiae), Pseudogene 2
  • Putative Ribosomal RNA-Processing Protein 7 Homolog B 4
  • Ribosomal RNA Processing 7 Homolog B (S. Cerevisiae) 2
  • Putative Gastric Cancer Antigen Zg14-Like Protein 4
  • RRP7BP 5

External Ids for RRP7BP Gene

Previous HGNC Symbols for RRP7BP Gene

  • RRP7B

Summaries for RRP7BP Gene

GeneCards Summary for RRP7BP Gene

RRP7BP (Ribosomal RNA Processing 7 Homolog B, Pseudogene) is a Pseudogene.

Additional gene information for RRP7BP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RRP7BP Gene

Genomics for RRP7BP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RRP7BP Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RRP7BP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RRP7BP Gene

Genomic Locations for RRP7BP Gene
chr22:42,555,223-42,582,038
(GRCh38/hg38)
Size:
26,816 bases
Orientation:
Minus strand
chr22:42,951,229-42,978,044
(GRCh37/hg19)
Size:
26,816 bases
Orientation:
Minus strand

Genomic View for RRP7BP Gene

Genes around RRP7BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRP7BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRP7BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRP7BP Gene

Proteins for RRP7BP Gene

  • Protein details for RRP7BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NSQ0-RRP7B_HUMAN
    Recommended name:
    Putative ribosomal RNA-processing protein 7 homolog B
    Protein Accession:
    Q9NSQ0
    Secondary Accessions:
    • B3KQ98

    Protein attributes for RRP7BP Gene

    Size:
    103 amino acids
    Molecular mass:
    12575 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRP7BP Gene

Post-translational modifications for RRP7BP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RRP7BP Gene

Domains & Families for RRP7BP Gene

Protein Domains for RRP7BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RRP7BP Gene

GenScript: Design optimal peptide antigens:
  • Putative gastric cancer antigen Zg14-like protein (RRP7B_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9NSQ0

UniProtKB/Swiss-Prot:

RRP7B_HUMAN :
  • Belongs to the RRP7 family.
Family:
  • Belongs to the RRP7 family.
genes like me logo Genes that share domains with RRP7BP: view

No data available for Gene Families for RRP7BP Gene

Function for RRP7BP Gene

Phenotypes From GWAS Catalog for RRP7BP Gene

genes like me logo Genes that share phenotypes with RRP7BP: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRP7BP Gene

Localization for RRP7BP Gene

Gene Ontology (GO) - Cellular Components for RRP7BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032545 CURI complex IBA 21873635
GO:0034456 UTP-C complex IBA 21873635
genes like me logo Genes that share ontologies with RRP7BP: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RRP7BP Gene

Pathways & Interactions for RRP7BP Gene

PathCards logo

SuperPathways for RRP7BP Gene

No Data Available

Gene Ontology (GO) - Biological Process for RRP7BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000028 ribosomal small subunit assembly IBA 21873635
GO:0006364 rRNA processing IBA 21873635
genes like me logo Genes that share ontologies with RRP7BP: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RRP7BP Gene

Drugs & Compounds for RRP7BP Gene

No Compound Related Data Available

Transcripts for RRP7BP Gene

mRNA/cDNA for RRP7BP Gene

7 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRP7BP Gene

No ASD Table

Relevant External Links for RRP7BP Gene

GeneLoc Exon Structure for
RRP7BP

Expression for RRP7BP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RRP7BP Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RRP7BP

genes like me logo Genes that share expression patterns with RRP7BP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRP7BP Gene

Orthologs for RRP7BP Gene

Evolution for RRP7BP Gene

ENSEMBL:
Gene Tree for RRP7BP (if available)
TreeFam:
Gene Tree for RRP7BP (if available)

No data available for Orthologs for RRP7BP Gene

Paralogs for RRP7BP Gene

No data available for Paralogs for RRP7BP Gene

Variants for RRP7BP Gene

Structural Variations from Database of Genomic Variants (DGV) for RRP7BP Gene

Variant ID Type Subtype PubMed ID
dgv101e203 CNV gain+loss 21179565
dgv1321e212 CNV gain 25503493
dgv1323e212 CNV loss 25503493
dgv4578n100 CNV gain 25217958
dgv4585n100 CNV gain 25217958
dgv843e214 CNV gain 21293372
esv2758839 CNV gain+loss 17122850
esv28197 CNV gain 19812545
esv32632 CNV gain 17666407
esv3568423 CNV loss 25503493
esv3575492 CNV gain 25503493
esv3647835 CNV loss 21293372
nsv1057729 CNV loss 25217958
nsv428391 CNV gain 18775914
nsv511642 CNV loss 21212237
nsv9912 CNV gain+loss 18304495

Additional Variant Information for RRP7BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRP7BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RRP7BP Gene

Disorders for RRP7BP Gene

No disorders were found for RRP7BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRP7BP Gene

Publications for RRP7BP Gene

  1. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3 4
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Reevaluating human gene annotation: a second-generation analysis of chromosome 22. (PMID: 12529303) Collins JE … Dunham I (Genome research 2003) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for RRP7BP Gene

Sources for RRP7BP Gene