Aliases for RRN3P3 Gene

Aliases for RRN3P3 Gene

  • RRN3 Pseudogene 3 2 3
  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 3 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 3 2
  • RRN3 RNA Polymerase I Transcription Factor Homolog Pseudogene 3
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 3 3

External Ids for RRN3P3 Gene

Previous GeneCards Identifiers for RRN3P3 Gene

  • GC16M022341
  • GC16M022431
  • GC16M020675

Summaries for RRN3P3 Gene

GeneCards Summary for RRN3P3 Gene

RRN3P3 (RRN3 Pseudogene 3) is a Pseudogene.

Additional gene information for RRN3P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RRN3P3 Gene

Genomics for RRN3P3 Gene

GeneHancer (GH) Regulatory Elements for RRN3P3 Gene

Promoters and enhancers for RRN3P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J022435 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.3 314 4.4 EP300 POLR2G PHF8 ZFX ZIC2 POLR2A CLOCK ZNF423 ZBTB26 KLF7 CDR2 RRN3P3 lnc-CDR2-4 SMG1P1 lnc-NPIPB5-6 piR-54236-002 lnc-NPIPB5-1
GH16J022368 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 6 +65.4 65422 7.8 EP300 FOXK2 ZBTB40 SIN3A NRF1 POLR2G USF1 SP1 NCOR1 PHF8 CDR2 SMG1P1 SMG1P4 SMG1P3 POLR3E NPIPB4 ENSG00000260635 NPIPB5 NPIPB3 ENSG00000260306
GH16J023362 Enhancer 0.7 Ensembl ENCODE 4.2 -924.8 -924811 1.8 SIN3A MYC NR3C1 KLF9 TCF7L2 E2F1 GATA3 MNT POLR2A ZNF579 CACNG3 RRN3P3 lnc-SCNN1G-3 piR-50443-139 SCNN1B
GH16J022424 Enhancer 0.6 ENCODE 0.4 +12.7 12727 1.9 ZBTB26 FOXA2 POLR2A PAX8 GLIS1 LCORL PHF20 BCL3 ZNF184 RAD21 piR-41645-001 piR-58791 MOSMO PDZD9 ENSG00000260277 ENSG00000260306 lnc-CDR2-4 CDR2 RRN3P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RRN3P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RRN3P3 Gene

Genomic Locations for RRN3P3 Gene
chr16:22,418,672-22,437,715
(GRCh38/hg38)
Size:
19,044 bases
Orientation:
Minus strand
chr16:22,430,090-22,449,036
(GRCh37/hg19)
Size:
18,947 bases
Orientation:
Minus strand

Genomic View for RRN3P3 Gene

Genes around RRN3P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P3 Gene

Proteins for RRN3P3 Gene

Post-translational modifications for RRN3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P3 Gene

Domains & Families for RRN3P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RRN3P3 Gene

Function for RRN3P3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P3 Gene

Localization for RRN3P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RRN3P3 Gene

Pathways & Interactions for RRN3P3 Gene

PathCards logo

SuperPathways for RRN3P3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RRN3P3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RRN3P3 Gene

Drugs & Compounds for RRN3P3 Gene

No Compound Related Data Available

Transcripts for RRN3P3 Gene

mRNA/cDNA for RRN3P3 Gene

3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P3 Gene

No ASD Table

Relevant External Links for RRN3P3 Gene

GeneLoc Exon Structure for
RRN3P3

Expression for RRN3P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RRN3P3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RRN3P3

SOURCE GeneReport for Unigene cluster for RRN3P3 Gene:

Hs.709576
genes like me logo Genes that share expression patterns with RRN3P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRN3P3 Gene

Orthologs for RRN3P3 Gene

Evolution for RRN3P3 Gene

ENSEMBL:
Gene Tree for RRN3P3 (if available)
TreeFam:
Gene Tree for RRN3P3 (if available)

No data available for Orthologs for RRN3P3 Gene

Paralogs for RRN3P3 Gene

No data available for Paralogs for RRN3P3 Gene

Variants for RRN3P3 Gene

Structural Variations from Database of Genomic Variants (DGV) for RRN3P3 Gene

Variant ID Type Subtype PubMed ID
dgv115n111 CNV duplication 26073780
dgv2813n100 CNV loss 25217958
dgv3n1 OTHER inversion 15895083
dgv47n16 OTHER inversion 17901297
esv25819 CNV gain 19812545
esv2758637 CNV gain+loss 17122850
esv32980 CNV loss 17666407
esv3368991 OTHER inversion 20981092
esv3638206 CNV loss 21293372
esv3638207 CNV gain 21293372
esv998989 OTHER inversion 20482838
nsv1051649 CNV gain+loss 25217958
nsv1052004 CNV gain 25217958
nsv1077770 OTHER inversion 25765185
nsv1140248 OTHER inversion 24896259
nsv1160373 CNV duplication 26073780
nsv428324 CNV gain 18775914
nsv433439 CNV gain 18776910
nsv499139 OTHER inversion 21111241
nsv571645 CNV loss 21841781
nsv7280 OTHER inversion 18451855
nsv9405 CNV gain+loss 18304495
nsv977939 CNV duplication 23825009

Additional Variant Information for RRN3P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRN3P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RRN3P3 Gene

Disorders for RRN3P3 Gene

Additional Disease Information for RRN3P3

No disorders were found for RRN3P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P3 Gene

Publications for RRN3P3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for RRN3P3 Gene

Sources for RRN3P3 Gene