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Aliases for RRN3P3 Gene

Aliases for RRN3P3 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 3 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 3 2

External Ids for RRN3P3 Gene

Previous GeneCards Identifiers for RRN3P3 Gene

  • GC16M022341
  • GC16M020675

Summaries for RRN3P3 Gene

GeneCards Summary for RRN3P3 Gene

RRN3P3 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 3) is a Pseudogene.

Additional gene information for RRN3P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P3 Gene

Genomics for RRN3P3 Gene

GeneHancer (GH) Regulatory Elements for RRN3P3 Gene

Promoters and enhancers for RRN3P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I022435 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 +0.3 314 3.2 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 POLR2B GLIS2 CDR2 PIR48235 RRN3P3 SMG1P1 GC16P022428
GH16I022368 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 6 +65.6 65564 7.5 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 CDR2 POLR3E SMG1P3 SMG1P1 SMG1P4 MFSD13B RRN3P3 ENSG00000260306 LOC440346 ENSG00000260635
GH16I023362 Enhancer 0.5 ENCODE 4.2 -925.2 -925212 1 ZNF121 E2F1 GATA3 SIN3A MNT MYC RRN3P3 RN7SKP23 GC16M023275 SCNN1B
GH16I022424 Enhancer 0.9 Ensembl ENCODE 0.4 +12.7 12727 1.9 CTCF FOXA2 ZSCAN4 PAX8 MNT RAD21 ZKSCAN1 LCORL ZNF23 POLR2A PIR52790 C16orf52 PDZD9 LOC105371129 ENSG00000260306 GC16P022428 CDR2 RRN3P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RRN3P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RRN3P3 Gene

Genomic Locations for RRN3P3 Gene
chr16:22,418,672-22,437,715
(GRCh38/hg38)
Size:
19,044 bases
Orientation:
Minus strand
chr16:22,430,090-22,449,036
(GRCh37/hg19)

Genomic View for RRN3P3 Gene

Genes around RRN3P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P3 Gene

Proteins for RRN3P3 Gene

Post-translational modifications for RRN3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P3 Gene

Domains & Families for RRN3P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RRN3P3 Gene

Function for RRN3P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P3 Gene

Localization for RRN3P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RRN3P3 Gene

Pathways & Interactions for RRN3P3 Gene

SuperPathways for RRN3P3 Gene

No Data Available

Interacting Proteins for RRN3P3 Gene

Gene Ontology (GO) - Biological Process for RRN3P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RRN3P3 Gene

Drugs & Compounds for RRN3P3 Gene

No Compound Related Data Available

Transcripts for RRN3P3 Gene

mRNA/cDNA for RRN3P3 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P3 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P3 Gene

No ASD Table

Relevant External Links for RRN3P3 Gene

GeneLoc Exon Structure for
RRN3P3
ECgene alternative splicing isoforms for
RRN3P3

Expression for RRN3P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RRN3P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RRN3P3 Gene:

RRN3P3

SOURCE GeneReport for Unigene cluster for RRN3P3 Gene:

Hs.709576
genes like me logo Genes that share expression patterns with RRN3P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRN3P3 Gene

Orthologs for RRN3P3 Gene

Evolution for RRN3P3 Gene

ENSEMBL:
Gene Tree for RRN3P3 (if available)
TreeFam:
Gene Tree for RRN3P3 (if available)

No data available for Orthologs for RRN3P3 Gene

Paralogs for RRN3P3 Gene

No data available for Paralogs for RRN3P3 Gene

Variants for RRN3P3 Gene

Sequence variations from dbSNP and Humsavar for RRN3P3 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000069514 -- 22,429,071(-) C/T intron_variant
rs1000095676 -- 22,423,832(-) T/C intron_variant
rs1000425156 -- 22,423,726(-) G/A intron_variant
rs1000752226 -- 22,435,089(-) C/T intron_variant
rs1000921519 -- 22,427,375(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P3 Gene

Variant ID Type Subtype PubMed ID
nsv977939 CNV duplication 23825009
nsv9405 CNV gain+loss 18304495
nsv7280 OTHER inversion 18451855
nsv571645 CNV loss 21841781
nsv499139 OTHER inversion 21111241
nsv433439 CNV gain 18776910
nsv428324 CNV gain 18775914
nsv1160373 CNV duplication 26073780
nsv1140248 OTHER inversion 24896259
nsv1077770 OTHER inversion 25765185
nsv1052004 CNV gain 25217958
nsv1051649 CNV gain+loss 25217958
esv998989 OTHER inversion 20482838
esv3638207 CNV gain 21293372
esv3638206 CNV loss 21293372
esv3368991 OTHER inversion 20981092
esv32980 CNV loss 17666407
esv2758637 CNV gain+loss 17122850
esv25819 CNV gain 19812545
dgv47n16 OTHER inversion 17901297
dgv3n1 OTHER inversion 15895083
dgv2813n100 CNV loss 25217958
dgv115n111 CNV duplication 26073780

Additional Variant Information for RRN3P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRN3P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P3 Gene

Disorders for RRN3P3 Gene

Additional Disease Information for RRN3P3

No disorders were found for RRN3P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P3 Gene

Publications for RRN3P3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RRN3P3 Gene

Sources for RRN3P3 Gene

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