Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RRN3P2 Gene

Aliases for RRN3P2 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2 2 3 5
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 2 3 4
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 2 2
  • RRN3 RNA Polymerase I Transcription Factor Homolog Pseudogene 3
  • Putative RRN3-Like Protein RRN3P2 4
  • RRN3-Like Protein 1 3

External Ids for RRN3P2 Gene

Previous GeneCards Identifiers for RRN3P2 Gene

  • GC16P028997
  • GC16P029089
  • GC16P026953

Summaries for RRN3P2 Gene

GeneCards Summary for RRN3P2 Gene

RRN3P2 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2) is a Pseudogene.

Additional gene information for RRN3P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P2 Gene

Genomics for RRN3P2 Gene

GeneHancer (GH) Regulatory Elements for RRN3P2 Gene

Promoters and enhancers for RRN3P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J029073 Promoter/Enhancer 1.1 Ensembl ENCODE 613.3 +0.1 79 2.2 ZNF687 MLLT1 POLR2A ELF1 IKZF1 NR2F1 RB1 GABPA ATF7 ZBTB33 RRN3P2 ENSG00000284671 ENSG00000260517 ENSG00000260908
GH16J029803 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 29.1 +735.7 735700 14.5 MTA3 SP1 ZNF652 ZFX CTCF CC2D1A ELF3 ZKSCAN8 MNT SIX5 PRRT2 ENSG00000280607 ENSG00000280893 GC16M029811 GC16P029809 MAZ PIR38319 PIR44883 PIR52049 PIR43581
GH16J030051 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 28.3 +978.6 978574 4.6 MTA3 CC2D1A ZFX SP1 ELF3 CTCF MNT NKRF ZNF121 CEBPG ALDOA TLCD3B LOC112694756 SETD1A SRCAP NPIPB12 INO80E ZNF764 NPIPB13 ZNF747
GH16J029992 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.5 +920.1 920124 4.9 ZNF473 HDGF MTA3 SP1 ZFX ELF3 ZKSCAN8 MNT SIX5 NKRF INO80E GC16M029996 HIRIP3 PIR46286 PIR37996 SRCAP SMG1P5 SETD1A SMG1P2 ENSG00000198106
GH16J029114 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 17.5 +41.2 41231 3 ZNF652 CC2D1A ELF3 CBFA2T2 MLLT1 CEBPG ZNF687 CTCF SP7 SP1 SPNS1 RRN3P2 NPIPB12 ENSG00000260853 ENSG00000260908 INO80E ATXN2L SMG1P2 NFATC2IP ENSG00000198106
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RRN3P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RRN3P2 Gene

Genomic Locations for RRN3P2 Gene
chr16:29,074,842-29,116,718
(GRCh38/hg38)
Size:
41,877 bases
Orientation:
Plus strand
chr16:29,086,163-29,128,039
(GRCh37/hg19)
Size:
41,877 bases
Orientation:
Plus strand

Genomic View for RRN3P2 Gene

Genes around RRN3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P2 Gene

Proteins for RRN3P2 Gene

  • Protein details for RRN3P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIE6-RN3P2_HUMAN
    Recommended name:
    Putative RRN3-like protein RRN3P2
    Protein Accession:
    A6NIE6

    Protein attributes for RRN3P2 Gene

    Size:
    340 amino acids
    Molecular mass:
    38035 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRN3P2 Gene

Post-translational modifications for RRN3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P2 Gene

Domains & Families for RRN3P2 Gene

Protein Domains for RRN3P2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NIE6

UniProtKB/Swiss-Prot:

RN3P2_HUMAN :
  • Belongs to the RRN3 family.
Family:
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P2 Gene

Function for RRN3P2 Gene

Phenotypes From GWAS Catalog for RRN3P2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P2 Gene

Localization for RRN3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RRN3P2 Gene

Pathways & Interactions for RRN3P2 Gene

PathCards logo

SuperPathways for RRN3P2 Gene

No Data Available

Interacting Proteins for RRN3P2 Gene

Gene Ontology (GO) - Biological Process for RRN3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RRN3P2 Gene

Drugs & Compounds for RRN3P2 Gene

No Compound Related Data Available

Transcripts for RRN3P2 Gene

mRNA/cDNA for RRN3P2 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for RRN3P2 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9
SP1: -
SP2: -
SP3: - -

Relevant External Links for RRN3P2 Gene

GeneLoc Exon Structure for
RRN3P2
ECgene alternative splicing isoforms for
RRN3P2

Expression for RRN3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RRN3P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RRN3P2 Gene:

RRN3P2

SOURCE GeneReport for Unigene cluster for RRN3P2 Gene:

Hs.720348
genes like me logo Genes that share expression patterns with RRN3P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRN3P2 Gene

Orthologs for RRN3P2 Gene

Evolution for RRN3P2 Gene

ENSEMBL:
Gene Tree for RRN3P2 (if available)
TreeFam:
Gene Tree for RRN3P2 (if available)

No data available for Orthologs for RRN3P2 Gene

Paralogs for RRN3P2 Gene

(3) SIMAP similar genes for RRN3P2 Gene using alignment to 1 proteins:

  • RN3P2_HUMAN
genes like me logo Genes that share paralogs with RRN3P2: view

No data available for Paralogs for RRN3P2 Gene

Variants for RRN3P2 Gene

Sequence variations from dbSNP and Humsavar for RRN3P2 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000200970 -- 29,103,318(+) T/C intron_variant
rs1000518488 -- 29,091,064(+) A/G intron_variant
rs1000561606 -- 29,073,269(+) C/T upstream_transcript_variant
rs1000642285 -- 29,107,537(+) CCCCCCC/CCCCCCCC/CCCCCCCCC intron_variant
rs1000688106 -- 29,107,656(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P2 Gene

Variant ID Type Subtype PubMed ID
dgv153e215 CNV deletion 23714750
esv1246246 CNV deletion 17803354
esv1259219 CNV insertion 17803354
esv2714172 CNV deletion 23290073
esv2758640 CNV gain+loss 17122850
esv2760421 CNV gain+loss 21179565
nsv103421 CNV deletion 16902084
nsv1055295 CNV gain 25217958
nsv1059555 CNV gain 25217958
nsv1123029 CNV deletion 24896259
nsv974793 CNV duplication 23825009
nsv984302 CNV duplication 23825009
nsv984303 CNV duplication 23825009

Additional Variant Information for RRN3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRN3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P2 Gene

Disorders for RRN3P2 Gene

Additional Disease Information for RRN3P2

No disorders were found for RRN3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P2 Gene

Publications for RRN3P2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 58
  3. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K … Sugano S (Gene 1994) 3 58

Products for RRN3P2 Gene

Sources for RRN3P2 Gene

Content
Loading form....