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Aliases for RRN3P2 Gene

Aliases for RRN3P2 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 2 2
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 2 4

External Ids for RRN3P2 Gene

Previous GeneCards Identifiers for RRN3P2 Gene

  • GC16P028997
  • GC16P029089
  • GC16P026953

Summaries for RRN3P2 Gene

GeneCards Summary for RRN3P2 Gene

RRN3P2 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2) is a Pseudogene.

Additional gene information for RRN3P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P2 Gene

Genomics for RRN3P2 Gene

GeneHancer (GH) Regulatory Elements for RRN3P2 Gene

Promoters and enhancers for RRN3P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I029073 Promoter/Enhancer 1.1 Ensembl ENCODE 563.4 +0.1 79 2.2 ZNF687 RB1 NR2F1 ZSCAN4 ELF1 GABPA POLR2A ATF7 MLLT1 ZBTB33 RRN3P2 ENSG00000284671 ENSG00000260517 LOC101928215
GH16I029803 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 29.1 +733.6 733601 10.3 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PRRT2 ENSG00000259952 ENSG00000280607 GC16P029807 GC16P029809 GC16P029941 PIR38319 MAZ PIR52049 PIR43581
GH16I030052 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 28.3 +979.4 979363 3.1 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ALDOA FAM57B SETD1A SRCAP NPIPB12 INO80E SMG1P5 SMG1P2 ZNF764 ZNF747
GH16I029992 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.5 +920.1 920082 4.8 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 INO80E GC16M029996 HIRIP3 PIR37996 PIR46335 SRCAP SMG1P5 SETD1A SMG1P2 ENSG00000198106
GH16I030020 Promoter/Enhancer 1.5 Ensembl ENCODE 20.2 +946.5 946469 1 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B DOC2A GC16P030021 SETD1A SRCAP INO80E ZNF764 BCL7C SMG1P2 ZNF689 SMG1P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RRN3P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RRN3P2 Gene

Genomic Locations for RRN3P2 Gene
chr16:29,074,842-29,116,718
(GRCh38/hg38)
Size:
41,877 bases
Orientation:
Plus strand
chr16:29,086,163-29,128,039
(GRCh37/hg19)

Genomic View for RRN3P2 Gene

Genes around RRN3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P2 Gene

Proteins for RRN3P2 Gene

  • Protein details for RRN3P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIE6-RN3P2_HUMAN
    Recommended name:
    Putative RRN3-like protein RRN3P2
    Protein Accession:
    A6NIE6

    Protein attributes for RRN3P2 Gene

    Size:
    340 amino acids
    Molecular mass:
    38035 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRN3P2 Gene

Post-translational modifications for RRN3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P2 Gene

Domains & Families for RRN3P2 Gene

Protein Domains for RRN3P2 Gene

Graphical View of Domain Structure for InterPro Entry

A6NIE6

UniProtKB/Swiss-Prot:

RN3P2_HUMAN :
  • Belongs to the RRN3 family.
Family:
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P2 Gene

Function for RRN3P2 Gene

Phenotypes From GWAS Catalog for RRN3P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P2 Gene

Localization for RRN3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RRN3P2 Gene

Pathways & Interactions for RRN3P2 Gene

SuperPathways for RRN3P2 Gene

No Data Available

Interacting Proteins for RRN3P2 Gene

Gene Ontology (GO) - Biological Process for RRN3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RRN3P2 Gene

Drugs & Compounds for RRN3P2 Gene

No Compound Related Data Available

Transcripts for RRN3P2 Gene

mRNA/cDNA for RRN3P2 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P2 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9
SP1: -
SP2: -
SP3: - -

Relevant External Links for RRN3P2 Gene

GeneLoc Exon Structure for
RRN3P2
ECgene alternative splicing isoforms for
RRN3P2

Expression for RRN3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RRN3P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RRN3P2 Gene:

RRN3P2

SOURCE GeneReport for Unigene cluster for RRN3P2 Gene:

Hs.720348
genes like me logo Genes that share expression patterns with RRN3P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRN3P2 Gene

Orthologs for RRN3P2 Gene

Evolution for RRN3P2 Gene

ENSEMBL:
Gene Tree for RRN3P2 (if available)
TreeFam:
Gene Tree for RRN3P2 (if available)

No data available for Orthologs for RRN3P2 Gene

Paralogs for RRN3P2 Gene

(3) SIMAP similar genes for RRN3P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RRN3P2: view

No data available for Paralogs for RRN3P2 Gene

Variants for RRN3P2 Gene

Sequence variations from dbSNP and Humsavar for RRN3P2 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000200970 -- 29,103,318(+) T/C intron_variant
rs1000518488 -- 29,091,064(+) A/G intron_variant
rs1000561606 -- 29,073,269(+) C/T upstream_transcript_variant
rs1000642285 -- 29,107,537(+) CCCCCCC/CCCCCCCC intron_variant
rs1000688106 -- 29,107,656(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P2 Gene

Variant ID Type Subtype PubMed ID
nsv984303 CNV duplication 23825009
nsv984302 CNV duplication 23825009
nsv974793 CNV duplication 23825009
nsv1123029 CNV deletion 24896259
nsv1059555 CNV gain 25217958
nsv1055295 CNV gain 25217958
nsv103421 CNV deletion 16902084
esv2760421 CNV gain+loss 21179565
esv2758640 CNV gain+loss 17122850
esv2714172 CNV deletion 23290073
esv1259219 CNV insertion 17803354
esv1246246 CNV deletion 17803354
dgv153e215 CNV deletion 23714750

Additional Variant Information for RRN3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRN3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P2 Gene

Disorders for RRN3P2 Gene

Additional Disease Information for RRN3P2

No disorders were found for RRN3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P2 Gene

Publications for RRN3P2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 58
  3. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K … Sugano S (Gene 1994) 3 58

Products for RRN3P2 Gene

Sources for RRN3P2 Gene

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