Aliases for RPSAP57 Gene

Aliases for RPSAP57 Gene

  • Ribosomal Protein SA Pseudogene 57 2 3 5
  • RPSA_29_1604 3
  • RPSAP57 5

External Ids for RPSAP57 Gene

Previous GeneCards Identifiers for RPSAP57 Gene

  • GC18P050563
  • GC18P052412

Summaries for RPSAP57 Gene

GeneCards Summary for RPSAP57 Gene

RPSAP57 (Ribosomal Protein SA Pseudogene 57) is a Pseudogene.

Additional gene information for RPSAP57 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP57 Gene

Genomics for RPSAP57 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP57 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J054742 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 250.7 -2.0 -1972 2.2 MAFK BHLHE40 HLF EP300 CEBPB FOS NR2F2 RPSAP57 CCDC68 POLI lnc-DYNAP-36 RAB27B
GH18J054741 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -4.5 -4473 1.2 CEBPB EP300 JUND ZNF316 NFE2 NFE2L2 MAFG MAFF ATF3 MAFK POLI RPSAP57 lnc-DYNAP-36 RAB27B CCDC68
GH18J054734 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -10.4 -10444 0.7 CEBPB EP300 RFX5 STAT3 JUND FOSL1 BHLHE40 JUNB ATF3 FOS lnc-DYNAP-36 RPSAP57 RAB27B CCDC68
GH18J054737 Enhancer 0.6 Ensembl dbSUPER 0.4 -6.3 -6273 0.8 JUND ZBTB33 FOS RPSAP57 lnc-DYNAP-36 RAB27B CCDC68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP57 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP57 Gene

Latest Assembly
chr18:54,744,673-54,745,656
(GRCh38/hg38)
Size:
984 bases
Orientation:
Plus strand

Previous Assembly
chr18:52,411,904-52,412,887
(GRCh37/hg19 by Entrez Gene)
Size:
984 bases
Orientation:
Plus strand

chr18:52,411,981-52,412,812
(GRCh37/hg19 by Ensembl)
Size:
832 bases
Orientation:
Plus strand

Genomic View for RPSAP57 Gene

Genes around RPSAP57 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP57 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP57 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP57 Gene

Proteins for RPSAP57 Gene

Post-translational modifications for RPSAP57 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP57 Gene

Domains & Families for RPSAP57 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP57 Gene

Function for RPSAP57 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP57 Gene

Localization for RPSAP57 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP57 Gene

Pathways & Interactions for RPSAP57 Gene

PathCards logo

SuperPathways for RPSAP57 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP57 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP57 Gene

Drugs & Compounds for RPSAP57 Gene

No Compound Related Data Available

Transcripts for RPSAP57 Gene

mRNA/cDNA for RPSAP57 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP57 Gene

No ASD Table

Relevant External Links for RPSAP57 Gene

GeneLoc Exon Structure for
RPSAP57

Expression for RPSAP57 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP57 Gene

genes like me logo Genes that share expression patterns with RPSAP57: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP57 Gene

Orthologs for RPSAP57 Gene

Evolution for RPSAP57 Gene

ENSEMBL:
Gene Tree for RPSAP57 (if available)
TreeFam:
Gene Tree for RPSAP57 (if available)

No data available for Orthologs for RPSAP57 Gene

Paralogs for RPSAP57 Gene

No data available for Paralogs for RPSAP57 Gene

Variants for RPSAP57 Gene

Additional Variant Information for RPSAP57 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP57

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP57 Gene

Disorders for RPSAP57 Gene

Additional Disease Information for RPSAP57

Genetic Association Database
(GAD)

No disorders were found for RPSAP57 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP57 Gene

Publications for RPSAP57 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPSAP57 Gene

Products for RPSAP57 Gene

Sources for RPSAP57 Gene