RPSAP57 Gene (Pseudogene)

Ribosomal Protein SA Pseudogene 57

GC18P054744
GIFtS:
7
See more...

Aliases for RPSAP57 Gene

Aliases for RPSAP57 Gene

  • Ribosomal Protein SA Pseudogene 57 2 3 5
  • RPSA_29_1604 3
  • RPSAP57 5

External Ids for RPSAP57 Gene

Previous GeneCards Identifiers for RPSAP57 Gene

  • GC18P050563
  • GC18P052412

Summaries for RPSAP57 Gene

GeneCards Summary for RPSAP57 Gene

RPSAP57 (Ribosomal Protein SA Pseudogene 57) is a Pseudogene.

Additional gene information for RPSAP57 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP57 Gene

Genomics for RPSAP57 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPSAP57 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J054742 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.9 -1872 2 CEBPB FOS NR2F2 BHLHE40 MAFK HLF RPSAP57 lnc-DYNAP-2 CCDC68 POLI lnc-DYNAP-36 RAB27B
GH18J054741 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -4.5 -4472 1.2 JUND CEBPB NFE2 ZNF316 JUN FOS MAFG EP300 FOSL2 MAFK POLI RPSAP57 lnc-DYNAP-36 RAB27B CCDC68
GH18J054734 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -10.4 -10444 0.7 JUND CEBPB FOS JUN FOSL1 EP300 FOSL2 RFX5 BHLHE40 STAT3 lnc-DYNAP-36 RPSAP57 RAB27B CCDC68
GH18J054737 Enhancer 0.6 Ensembl dbSUPER 0.4 -6.4 -6373 1 JUND FOS FOSL2 ZBTB33 RPSAP57 lnc-DYNAP-36 RAB27B CCDC68
GH18J054733 Enhancer 0.3 Ensembl dbSUPER 0.4 -11.0 -10972 0.2 lnc-DYNAP-36 RPSAP57 RAB27B CCDC68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP57 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP57 Gene

Genomic Locations for RPSAP57 Gene
chr18:54,744,673-54,745,656
(GRCh38/hg38)
Size:
984 bases
Orientation:
Plus strand
chr18:52,411,981-52,412,817
(GRCh37/hg19)
Size:
837 bases
Orientation:
Plus strand

Genomic View for RPSAP57 Gene

Genes around RPSAP57 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP57 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP57 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPSAP57 Gene

Proteins for RPSAP57 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPSAP57 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP57 Gene

Domains & Families for RPSAP57 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP57 Gene

Function for RPSAP57 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP57 Gene

Localization for RPSAP57 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP57 Gene

Pathways & Interactions for RPSAP57 Gene

PathCards logo

SuperPathways for RPSAP57 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP57 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP57 Gene

Drugs & Compounds for RPSAP57 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPSAP57 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPSAP57 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP57 Gene

No ASD Table

Relevant External Links for RPSAP57 Gene

GeneLoc Exon Structure for
RPSAP57

Expression for RPSAP57 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP57 Gene

mRNA expression in normal human tissues for RPSAP57 Gene
mRNA expression by GTEx for RPSAP57 Gene
genes like me logo Genes that share expression patterns with RPSAP57: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP57 Gene

Orthologs for RPSAP57 Gene

Evolution for RPSAP57 Gene

ENSEMBL:
Gene Tree for RPSAP57 (if available)
TreeFam:
Gene Tree for RPSAP57 (if available)

No data available for Orthologs for RPSAP57 Gene

Paralogs for RPSAP57 Gene

No data available for Paralogs for RPSAP57 Gene

Variants for RPSAP57 Gene

Additional Variant Information for RPSAP57 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP57

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP57 Gene

Disorders for RPSAP57 Gene

Additional Disease Information for RPSAP57

Genetic Association Database
(GAD)

No disorders were found for RPSAP57 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP57 Gene

Publications for RPSAP57 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPSAP57 Gene

Products for RPSAP57 Gene

Sources for RPSAP57 Gene