Aliases for RPSAP52 Gene

Aliases for RPSAP52 Gene

  • Ribosomal Protein SA Pseudogene 52 2 3 5
  • RPSA_17_1251 3
  • RPSAP52 5

External Ids for RPSAP52 Gene

Previous GeneCards Identifiers for RPSAP52 Gene

  • GC12M064439
  • GC12M066151
  • GC12M063204

Summaries for RPSAP52 Gene

GeneCards Summary for RPSAP52 Gene

RPSAP52 (Ribosomal Protein SA Pseudogene 52) is a Pseudogene.

Additional gene information for RPSAP52 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP52 Gene

Genomics for RPSAP52 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP52 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP52 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPSAP52 gene promoter:
  • PPAR-gamma1
  • TBP
  • TFIID

Genomic Locations for RPSAP52 Gene

Genomic Locations for RPSAP52 Gene
chr12:65,758,020-65,826,997
(GRCh38/hg38)
Size:
68,978 bases
Orientation:
Minus strand
chr12:66,151,800-66,220,754
(GRCh37/hg19)
Size:
68,955 bases
Orientation:
Minus strand

Genomic View for RPSAP52 Gene

Genes around RPSAP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP52 Gene

Proteins for RPSAP52 Gene

Post-translational modifications for RPSAP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP52 Gene

Domains & Families for RPSAP52 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP52 Gene

Function for RPSAP52 Gene

Phenotypes From GWAS Catalog for RPSAP52 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP52 Gene

Localization for RPSAP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP52 Gene

Pathways & Interactions for RPSAP52 Gene

PathCards logo

SuperPathways for RPSAP52 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP52 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP52 Gene

Drugs & Compounds for RPSAP52 Gene

No Compound Related Data Available

Transcripts for RPSAP52 Gene

mRNA/cDNA for RPSAP52 Gene

2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP52 Gene

No ASD Table

Relevant External Links for RPSAP52 Gene

GeneLoc Exon Structure for
RPSAP52

Expression for RPSAP52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP52 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP52 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPSAP52

SOURCE GeneReport for Unigene cluster for RPSAP52 Gene:

Hs.558686
genes like me logo Genes that share expression patterns with RPSAP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP52 Gene

Orthologs for RPSAP52 Gene

Evolution for RPSAP52 Gene

ENSEMBL:
Gene Tree for RPSAP52 (if available)
TreeFam:
Gene Tree for RPSAP52 (if available)

No data available for Orthologs for RPSAP52 Gene

Paralogs for RPSAP52 Gene

No data available for Paralogs for RPSAP52 Gene

Variants for RPSAP52 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPSAP52 Gene

Variant ID Type Subtype PubMed ID
dgv1521n100 CNV gain 25217958
esv2210361 CNV deletion 18987734
esv2614260 CNV deletion 19546169
esv2676501 CNV deletion 23128226
esv2745997 CNV deletion 23290073
esv275418 CNV gain+loss 21479260
esv3549326 CNV deletion 23714750
esv6997 CNV gain 19470904
nsv1134236 CNV deletion 24896259
nsv507649 OTHER sequence alteration 20534489
nsv975507 CNV duplication 23825009

Additional Variant Information for RPSAP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPSAP52 Gene

Disorders for RPSAP52 Gene

Additional Disease Information for RPSAP52

No disorders were found for RPSAP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP52 Gene

Publications for RPSAP52 Gene

  1. RPSAP52 lncRNA Inhibits p21Waf1/CIP Expression by Interacting With the RNA Binding Protein HuR. (PMID: 31831098) D'Angelo D … Fusco A (Oncology research 2020) 2 3
  2. Genome-wide association reveals genetic effects on human Aβ42 and τ protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han MR … Alzheimer's Disease Neuroimaging Initiative (BMC neurology 2010) 3 41
  3. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight BF … GIANT Consortium (Nature genetics 2010) 3 41
  4. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  5. RPSAP52 lncRNA is overexpressed in pituitary tumors and promotes cell proliferation by acting as miRNA sponge for HMGA proteins. (PMID: 31076808) D'Angelo D … Fusco A (Journal of molecular medicine (Berlin, Germany) 2019) 3

Products for RPSAP52 Gene

Sources for RPSAP52 Gene