Aliases for RPSAP50 Gene

Aliases for RPSAP50 Gene

  • Ribosomal Protein SA Pseudogene 50 2 3 5
  • RPSA_24_1172 3
  • RPSAP50 5

External Ids for RPSAP50 Gene

Previous GeneCards Identifiers for RPSAP50 Gene

  • GC11P109359
  • GC11P109853

Summaries for RPSAP50 Gene

GeneCards Summary for RPSAP50 Gene

RPSAP50 (Ribosomal Protein SA Pseudogene 50) is a Pseudogene.

Additional gene information for RPSAP50 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP50 Gene

Genomics for RPSAP50 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP50 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J109980 Enhancer 0.4 ENCODE 250.7 -1.0 -968 1.1 IKZF1 IKZF2 MTA2 RPSAP50 lnc-ZC3H12C-3 ZC3H12C HSALNG0087037 LOC107984384 RDX C11orf87
GH11J109984 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.9 2926 1.1 BCLAF1 SP1 BCL11A ZNF592 SIN3A TRIM22 SMC3 IRF4 CBFB MAX ENSG00000270423 lnc-ARHGAP20-6 ZC3H12C RPSAP50 LOC107984384 RDX C11orf87
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP50 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP50 Gene

Latest Assembly
chr11:109,982,192-109,983,043
(GRCh38/hg38)
Size:
852 bases
Orientation:
Plus strand

Previous Assembly
chr11:109,853,124-109,853,737
(GRCh37/hg19 by Entrez Gene)
Size:
614 bases
Orientation:
Plus strand

chr11:109,852,918-109,853,769
(GRCh37/hg19 by Ensembl)
Size:
852 bases
Orientation:
Plus strand

Genomic View for RPSAP50 Gene

Genes around RPSAP50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP50 Gene

Proteins for RPSAP50 Gene

Post-translational modifications for RPSAP50 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP50 Gene

Domains & Families for RPSAP50 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP50 Gene

Function for RPSAP50 Gene

Phenotypes From GWAS Catalog for RPSAP50 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP50 Gene

Localization for RPSAP50 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP50 Gene

Pathways & Interactions for RPSAP50 Gene

PathCards logo

SuperPathways for RPSAP50 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP50 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP50 Gene

Drugs & Compounds for RPSAP50 Gene

No Compound Related Data Available

Transcripts for RPSAP50 Gene

mRNA/cDNA for RPSAP50 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP50 Gene

No ASD Table

Relevant External Links for RPSAP50 Gene

GeneLoc Exon Structure for
RPSAP50

Expression for RPSAP50 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP50 Gene

Protein differential expression in normal tissues from HIPED for RPSAP50 Gene

This gene is overexpressed in Skin (66.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPSAP50 Gene



Protein tissue co-expression partners for RPSAP50 Gene

genes like me logo Genes that share expression patterns with RPSAP50: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP50 Gene

Orthologs for RPSAP50 Gene

Evolution for RPSAP50 Gene

ENSEMBL:
Gene Tree for RPSAP50 (if available)
TreeFam:
Gene Tree for RPSAP50 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPSAP50

No data available for Orthologs for RPSAP50 Gene

Paralogs for RPSAP50 Gene

No data available for Paralogs for RPSAP50 Gene

Variants for RPSAP50 Gene

Additional Variant Information for RPSAP50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP50
Leiden Open Variation Database (LOVD)
RPSAP50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP50 Gene

Disorders for RPSAP50 Gene

No disorders were found for RPSAP50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP50 Gene

Publications for RPSAP50 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPSAP50 Gene

Products for RPSAP50 Gene

Sources for RPSAP50 Gene