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Aliases for RPSAP50 Gene

Subcategory (RNA class) for RPSAP50 Gene

lncRNA

Aliases for RPSAP50 Gene

  • Ribosomal Protein SA Pseudogene 50 2 3 5
  • RPSA_24_1172 3

External Ids for RPSAP50 Gene

ORGUL Members for RPSAP50 Gene

Previous GeneCards Identifiers for RPSAP50 Gene

  • GC11P109359
  • GC11P109853

Summaries for RPSAP50 Gene

GeneCards Summary for RPSAP50 Gene

RPSAP50 (Ribosomal Protein SA Pseudogene 50) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPSAP50 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP50 Gene

Genomics for RPSAP50 Gene

GeneHancer (GH) Regulatory Elements for RPSAP50 Gene

Promoters and enhancers for RPSAP50 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I109980 Enhancer 0.4 ENCODE 550.8 -1.0 -968 1.1 IKZF1 IKZF2 RPSAP50 ZC3H12C LOC105369484
GH11I109984 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +2.9 2926 1.1 SMAD1 BACH1 BMI1 IRF4 RELA ZNF766 ATF7 BCLAF1 IKZF2 RUNX3 ENSG00000270423 ZC3H12C RPSAP50
GH11I109970 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.2 -10155 2.7 HDGF PKNOX1 SMAD1 BMI1 BATF KLF5 IRF4 RAD21 ATF7 ETV6 RPSAP50 LOC105369484
GH11I109955 Enhancer 0.9 ENCODE dbSUPER 0.3 -25.7 -25705 1.1 SMAD1 EBF1 RBBP5 RELA ATF7 ETV6 IKZF2 RUNX3 SMARCA5 ZNF687 LOC105369484 RPSAP50
GH11I109960 Enhancer 0.7 Ensembl ENCODE 0.3 -21.3 -21257 1 ZNF449 MAFG HNF4A NFE2 ZBTB40 NR2F2 LOC105369484 RPSAP50
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP50 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP50 Gene

Genomic Locations for RPSAP50 Gene
chr11:109,982,192-109,983,043
(GRCh38/hg38)
Size:
852 bases
Orientation:
Plus strand
chr11:109,852,918-109,853,769
(GRCh37/hg19)

Genomic View for RPSAP50 Gene

Genes around RPSAP50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP50 Gene

Proteins for RPSAP50 Gene

Post-translational modifications for RPSAP50 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP50 Gene

Domains & Families for RPSAP50 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP50 Gene

Function for RPSAP50 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP50 Gene

Localization for RPSAP50 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP50 Gene

Pathways & Interactions for RPSAP50 Gene

SuperPathways for RPSAP50 Gene

No Data Available

Interacting Proteins for RPSAP50 Gene

Gene Ontology (GO) - Biological Process for RPSAP50 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP50 Gene

Drugs & Compounds for RPSAP50 Gene

No Compound Related Data Available

Transcripts for RPSAP50 Gene

mRNA/cDNA for RPSAP50 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP50 Gene

No ASD Table

Relevant External Links for RPSAP50 Gene

GeneLoc Exon Structure for
RPSAP50
ECgene alternative splicing isoforms for
RPSAP50

Expression for RPSAP50 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP50 Gene

Protein differential expression in normal tissues from HIPED for RPSAP50 Gene

This gene is overexpressed in Skin (66.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPSAP50 Gene



Protein tissue co-expression partners for RPSAP50 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP50 Gene:

RPSAP50
genes like me logo Genes that share expression patterns with RPSAP50: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP50 Gene

Orthologs for RPSAP50 Gene

Evolution for RPSAP50 Gene

ENSEMBL:
Gene Tree for RPSAP50 (if available)
TreeFam:
Gene Tree for RPSAP50 (if available)

No data available for Orthologs for RPSAP50 Gene

Paralogs for RPSAP50 Gene

No data available for Paralogs for RPSAP50 Gene

Variants for RPSAP50 Gene

Additional Variant Information for RPSAP50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP50 Gene

Disorders for RPSAP50 Gene

Additional Disease Information for RPSAP50

Genetic Association Database
(GAD)

No disorders were found for RPSAP50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP50 Gene

Publications for RPSAP50 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPSAP50 Gene

Sources for RPSAP50 Gene

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